MmuINT0124737 @ mm10
Intron Retention
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69731746-69732274:+
Coord C1 exon
chr2:69731746-69731813
Coord A exon
chr2:69731814-69732196
Coord C2 exon
chr2:69732197-69732274
Length
383 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
GTACCATATTTCACTTACAGACT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GAGCAAAACAATTGGCTCAGTCATTCTTGGTGGATTTTTGTTTTTTTATTGTTTCCCCCAACTTAAAG
Seq A exon
GTAATATACATGTTTTGTTCTCTAGTTTTACAGACTTAATACAGTATTCTGTATGGGGGTAGTAATCTGGTTTTGGTTGGTAAAATAGGAATTTATTATACGATAATGATGGTTCTCTTTAAGAGCACATTTACTAAAATTGGAATAATAAAAGAAGATTAACATAGTAATTACTATGCCTTAATCTTAAAGTTTTTTTCTATTTTCCTCAAAGTATAGTCTAATCTCCAAGAATCATAGTGAGTTTCCCCCTAGGAGACAAATGTAAAATAAGTTCAACAACATTTGTAATTTATGTGCAATAGATTTTGCTTTTAGACATTAATAGAAAATCTTTGCCATTTTAGTTGGCTGCCTAAAACTGTACCATATTTCACTTACAG
Seq C2 exon
ACTGAAGTGTTGGAACCATGGGGATAAAGGTCCAGCGTCCTCGGTGTTTTTTTGACATTGCCATTAATAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133:ENSMUST00000040915:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types