GgaINT0048368 @ galGal3
Intron Retention
Gene
ENSGALG00000009839 | PPIG
Description
NA
Coordinates
chr7:20096087-20104213:-
Coord C1 exon
chr7:20104177-20104213
Coord A exon
chr7:20096167-20104176
Coord C2 exon
chr7:20096087-20096166
Length
8010 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTATCTTTTATTATTTACAGTGT
3' ss Score
7.86
Exon sequences
Seq C1 exon
CGCTGAGGAGTGCGGGGCGACGCGGGCCGCGAGCGGG
Seq A exon
GTGAGTGCCGGTACCGCCATGTGGCCGGGGGAGGGCCGCGGCCTGGGCGGCCGCCGAGACCTCGGGGCCGGGGACGGAGGTCGCGAGGCCCGGGCCCCGGCACGGAGGGGGCGGGTGCTGGTGCCGAGCGCCTACCCGGCCCGCCGGGGGCATCGCGGGGTCCCTCTCGCTGCGGCTCGTTGTGCGGGGCGGCGGCTCTGAAGGGAGAGCCCGGGGCACCCCGCGTGAGGGCGGCCCCTGGGGGGAGCGCGGGGCCCGGGGAGCCGCGAGCGGGCCGGGGCGGGAGGCGGCGACCGGGGCCTGGTGAGAACTGCGGCCGGCGGTGGGGGCCGCACGGCCGGCACGGCTCCCCGCTGCGGAACGTGCCGCCGGGCGCGCTGCCCGCGGCCTGGGTGCTGCTCGGCGCCGGCCTCGGAGTTTGAATGAAGCCTTCCTTCTTCGCCAGAAGGCGAAGTAAGCGGCTATCTGTGTGCCACATGTTCTCCTCCCTCCGCAGGCCTCTCCCTGGGATGCGGAGCCCGGAGGAGCTGCCGTGGCGGCAGGACGTTCCCCGGCTCCCTCTTAGGGCTTTCTTAAAGCTCTAAAAGGGTTTTTGTGGGAAATGCATGTCGCCCCCATTACGTTTATGGCCACGACCAAGCCATTAGTACTGCATATGTACAGTTATTCTTGAAATCTTCTGGAGGCTTTGGAGGAGGGAGGCTTAAGAGAAAAAGCAACAGTGTATTGAAATAGGCTGAGATTTCTGCTATATTGCCTTATAATTCACTCAGAGAGGTGTCTTCCATAGGCCTGATAAGGAGGTCAGTTTGGTTGGTAGCTGCTCAGTGTTAGACTTCAGTTCATTATGTTTTAGTAAGAGAGAATATCCAGTTTTTCATGTTTTTGCTCCATATTACCTGCAGGAAAAGTTGTTCTTTGGGTGGAGATAGATAATGGGTTTTGTTGGGGCTTTTTTTTTTTTTTTTCTTTATTTTGTTTCACAATAATGCACTAGGAACAGTATGAGTCACATTTTTAGGTGCCACCATGTTAAGTAAATGATCAAAATATGTCAACTAGACATGTTTTGTGAAGCAGTACTTTATTTACATTTGAAGAACGAATATTTTTGATTTATCATGTTTTTTTTTTTTAATAACTTCTAATGATTTGAAAAAAGTATGGCTTTAGTATATGAGGTAGGTCTGAAGGGGGACATACAAAATAATACTGAGGATCCTTGGAGAGCACCCTTTGGGGCTATATGTTTTAATAAGAGCATTTTTTCCAGTCCTTGTTTGTGAAACTATTTTTGTTTAGGAGTAGCCAGTCGATCATCCAGCTGTTAATTTTATTTTTTTTTAATTGGCCTTAGGATTTCAGAAAATCAGTGGGTTGTGAGAGAGCTGGGAGTTAAGCGTATGTGTTGCAGTGGAGGATGTTACTGTAGTGCAGTGTGATGTTTCCACTGCCACTTCAGTCCTCTGTGCCACCTGCACTTCCATACGAGAGCCACCTTCCATTTGGAAGCAGCCAGGAGCACATCCAGCTGTCTTCTAATGGAGTGAAGATTTGGTTGGAGGTTGGGGTGGGGCTGGGAAGGAGTGCAGAACTAAAGTAGTTGAGAAGAGGAGGAGAACAAGAGATCATAGAACAAGATTTTTGGGGGGTTGTGGTTGGCAAATATACGTCAGCATTAAAAAACTGTGTACAGCTATTACACAGTTTAGCCTTAATGTGATCTTCAGTAGCTAGGACAGAAGTCTGAAGTTTGTTTTGGTGATCCCAGCAGGTGTCTGACTTGCTGATTACACTGTGCCTTTTAAACACTTTTTCTCTTTTACACAACACTAAAACTTGTCTTTTCTTAGTATTTTCTTAGTTCTAAAATTCTGATTTATTAGCTAATGGCTTCTTCTGGACCTAATGCAGCTCCGGTTTCCAGTTCTGAATGGTAGGATTGAAGTAGTCATGTTCTTCACTGCTTCTGGGAGCGCTGTGAGCACCGGCTAAAGGCATTTAGTTGTGCGCAGACCTAGGAGCACATGCCTGTGTTTTTTCACAACTCTAACAGCAGACAAGGAAAAGAAAAGAAAAAAGGAAAAAAAAAAAAACCCCAAACTTTTCTGTGTAAATAAGATGATAGAAAATTGTGACTTACTCTCAGCAGCAAAGTTTTTTCTTGGTGTCGACGTAAGTGCATAGGTATTCATATTTTTCATTTTAGCTTTCTCTTTATTAGGACAATAAAAGGAAGGGCGTGATCTGGTGAGAACTTGTATCCCTGTTCAGATAGTTTTAGGAGAATGTTATCAGCTTTTCAGCTGAATCTTGTGTTCTTTCAACCGAGACGTTACATCTAGTTGTGCATTCCTTGTGTACTTCAATACAAGAAGCTCAATCTTATGTTAACTGCAAAAAATCTTACTAAAAGTATCATAAGTTAGTTCTGCTGTGCAGTAGTGTAGGAGTACATTCTGCATATTTATTCAGGGCCAATCTGAACATGATATCTAATATCCCTATAAAAGCGTTGCAGGCTCTTGGCAGGCGATGGCTGATCTGGTCAGGTAACTCTTCCCTTGATTTCATTTTTTAGGGGGGAAAAATATTATACAAATAGTTCAAAAGACACTTTCAGCATTACTTGAGAAATTCCTCAGACCTTTGTAAAATACTATTTTTTGTCTACAAGACATTTTTAACTCGCGTGATTGCCAAGGCGGCATCCACAATCTGAAATGTGATGAAATGTAGTACCTATTAAAAATCTGTTGGCAAAACAAAGACCTGTGCTGCTGATGAGTAAAATGAAAGCAAATTAATTTCTTTAGTTGTCATTGCTGCTATTTGGGAGGGTTTTTTTGATAGGAGAAGGTCCTGTTATTTGGGAACACATTGAGGAAATTATTGAGGCTAGGATTGGGCTTGTTGGATTTTTGTTCTCACCTTCGGTATCATCCTACAGATGTGGAAGCTCTGACACAGGAATGGCATCCTGTGACTAGGATATCATGTCTCATTTAGCAATCATACATTCATTTGCAGTTTAATCTGTATAAAACAAACATCCCATTCTCAGGCTACGGCTGCACTGTCATATTAAGTTGATGTGTGCCACTGCCGAAGTCTTTTCTTGGAAGGAGGCAGAGGAGGGTGTAGTTTTCATGTGTTTCAGGAGACCCACCTATACCAGGGCTGACCACACTGTTGTGTGAGCCCTCCATACTGGGATTCAGTCTACATGGCTTTAAGTGATTGTGGAACAGCGCTGATGAATGTGATGCATGCTTTTGGTGTTCGCTTGGTGTATTTGTGTTCTCTAAATTGAAAATACTACTTAAAAACATTTCTGAAGATTCTGGATGGCTGTCTTTGCAATATAAATCGGTGTAGTTTTGTCTTTGTGCATGTGAAGATGACCTGAAACAAAATGCTGGGAATGTGGATTTATGTGCTTTATTTTTCATTTGGGCATTGAATGAAGACCGCTGCCAAGGATAACTGTAAATTGATGCAAGGAAACTAATACGAAGACAAAGTCAAGGAGAAATTAGAAGTAGGGGAGAGGAGAGTAGATATGAGTAGGTGATGATAGAGAATGAAATGAAAGAAGAGGACGTAGTAAGATTTTTTTCCTACTAAATACATTTTTGCTCCAAACCTGTTGTGCTCTTTGCAGGGTCTGGAACAAACTGGCAGCCCAGTGAGCTGTGTGCCATGGTTACAGGTGAAGGGTTTATTTTCCTCAGAACTGGGAAATAGTCCCATACTGCTGCTTGCCATCAGGTCTTGTGAGATGCGTGACACGTGGATCGCCCAGTTGATGTGCATCTGTGAGTGCACATTTCAGTCTAACCCATTTTGACTAACCCATTTCAGTTGAAAGGAGCTCTGTTATATCAAGCAGTATTATTACTAGATCCTTGCTAGTACAAGTAATTTTGACTGGAAAAAAAATTCCGCAGGATGTGTTCTTCAGCATATCAACTAGTAGGAGTGACAGTCTCTGGCAGAGATGCTTGTGAACAGTCTGTGAGGGTTATCTTTTTCATTGGCGTGGCTCATTTTGGAAGGGAACAGCTGTCTGCAGCCTGGCCGGGAGCTGTCCGTCTTTGTCCGACAAATACTTGAGCGAAATAATGAGTAATGCAGGTGTGAAGGGATGCGAACCCTGAATGACACAGCTGGTGATGCACTAGTTATAGGTGTAGCTGTTATGAAAAAAACATTTTTTGGTTGTATTTCTTTTATTTCTGAAAATGAGATAAACAGTTCAGCATAGAGTGCTTTTGTATTTATTGATAAATGGGCTGTTTTAGGCATACTGAAGGTGGTTGGTTGGTTTTTTTTTTTGCATTGTTTCTTCTTCTCTTAGTAAGAGGCTTCTCTAGCAGGAGATGGATGAAAATGCTGAGTGATGTGGTCATTTCAGAATAGCACTTGGATTGTTGTATCCTTCAGTACAGAGTTTTGGAAGGAAAAATTAAGCTAACTTGTCAGGAGTGCCCTTCTCCGCAGCATATTTCTGTATGTAGATACAGTGGGTGCCTTTTGGATTGACTTTAGAATCATATTCCCTTCAAATTTTATCATGTATTGTGAGTTAATAGCATCTGCATTTTAACTGAAATTAAATATAAGGAGAAAAATATGCAAGTCATGTAAGCCCTGTTGTTACCAACACACGTATTGAGCTTCACATGTAATTTTCTCTTTTTTGTTCTTAGTATTCTCAAATTACTTTTCTCTGCTGGTTCTGAACTCACTCTGTATACTTGCTTTTAATACAGACAAGTTTTGAATGATCATTGTAAAGGATTGTATTTATTATTAAATACTACGTGGATCATCTGTGACTCAGTAGTACTGTCCTCAGTGAGGAGATGTGTCTGAAGTGCTGGCTGTACAAAAGGTACATATATCTACTGGAGAGCAAATACTCTCTTAAGGTATAGGTAGTTTAAGGTAAATGTTGTTGATATTTTAGCCTGGTTGAAGAGGGCTGTAACTAAGTTTATTGAGCCTGTCAGCTCTCTCCTACTTGTACATCCAGCTCCCTGTCTACCCCAGCCTTTCCAGTAGGTTTTGATTCTGTTTTCCAAATGTTTTTAAAGATAAGGCAGTTCTGGGTAGCTCAGGAGAGTCAATTGCTGCACAAAAAAGAGTTATCTGTTAGTGTTTTCCCCAAGAGAGGCATTTGCAGCATCTGCTCAAGGGAAGGTATGTTTATTTGGTGTGATGTGTGTCCAGTCAGCCTGCTTGCCCTGAGCAGTTGCCATCTAGCACCATGTGCAGCCAGTATTTGTTGGAGAAGCGATTCTGTTACAGGACGTGTTAAAGCAGTTTGTGTTTTTTTTGTCTAAAGTACTGTATATAAATGTTCACGTAGACCTCTTCATTTCTCAAGCAGATTGCCTGTAAAGCAGGGTTGAATCCCTCCTCACCCAACCTACTGAAGGCCAAAATGCTTTAAGTTTGGGTACGATTAGTCAGTTACTGCATTGCTGGGCCTTAGGTGGCTTGGTTATTTTCACCCCGTCAGTTTGATCACCAAACAATATGTATTGTAGCATTTGTTCTGAGAGGCTTTCGGCAAAAAACTGACGTGTTCTCTTCCTCTCCCGTGTGTCTGTGCAGCACATTGTGCTGTTGGCAGCGTGTGAGTTGATGGGCAGCCTGTCCTCCTGCCTGCCTTATCTACATCCCCTGTGTGCCTCTCGTGGGTCTGGCAGCCTGTGACCTGGCAGCATGCAAGTCCCTGGCTACGTGCACTTTCTCTGGTTCTCTGACTGGCTACAGAAGTTGCATTAATAGGGGAAGTACAGCAAACAGTTCAGAGAGAAGAGCAAGCAGGCTGAGGGCTGAGGCAGGGCTCCTGCCGCTTCTGGTGAATCTCTTGCTTGTGTGAATTTATGTGCTTGTTACACAGCTAAGCATATGTCTGCTGAGGTTCTGCATGTTTGCACAGTGTAGCTGTGCTAAGAATCACTTGGATGATAAATTGTTGAGTGGTGGTGCATGTAAATCCTTCCTGCGTTGCTCTTGTGATTTTTTTGCTGTGTAATCTTGGCAAGATGCTAGGAGTGATGCTGAGCACAAGGAGAGAGAATGCAGGCTAACATGGTTCTAGAATCTTTAGATTCCTTGTAGCCTCTCCTTCATAAACTGGAGTGACGGATGACAACAGTTGTATATTTTGAGGCTGTTTTGTGGCACAGCTATGGCTGAAGCTTTAGGAAAGATGTGTGCTATATGTTGTTAGATTTAAGTAGTGTTTTCTGGCAATTAAAGAAAAAAAGAAAATTATGGATTATATTTCAAGTTCTGGAGAAAGTATTCCAGTCTTATGGATCTTCTTGCCATCGCTGTGGTTTTTCTCCCCTCTCTGAATTCAGAGAGGATGCAGCCTCAGAGAAGTGCTATGTCTGTATGTGATGCTGGAAGACCGCGGTTGCAGACGAAATTAAGTTACTGCTTGTTACACAAAAACAAGGGGATTTATGTGCTTAAAGGTATCAGAAGTTGCATTAAAAGTATCAAGATAAACAGATAAGCAATGACATAAAAGGAAAAGAAACAATACGAAGCCAGAATTGTTTCATTTGGCAGTAATTTTGGAAGTTGTACATCTTTTTTTTTTATGATGTGGAATGGTTTTGATCCTGGTTAGAGCAGCTCCTGACACTGTGATGGCAAGAATCCTGGTAATATGCCTAAAAATGAAGGTTTAATCCTCAGTGTAGCAACATGTTCTAGTTTTGATCATCATAACTTAGCTTCTGCTCTTTGACCCATCTCCTTACTGGTGGCTAAAGTCCTGGTATTTCTGAAAGCATGCCCACCTGACTTGCTCAACTGTTATGAGGAACTCAGTGAAAATCCTTCATGTTACATTGCTTACTTCTTTACGTCCAAGTTTGACACAGTAGCACGCACAATCAGGGGCAGCCTGTGGGCCTGTCACCTCCACAGTCAGGAGGTCCATCAGTTCACCTCAGGTCTGTACTTCCTGCTGGGGAGTTGAGCAGTTCCTCATGGGAGAGGTGTGCTAATCAGGCTGCGGTTGTCAAAGCCCAGAGCTGTGGTCTAAACCCATCACTGTAGTTTGCCATGGGAGAAAATGTGCTGTGTAAGTAGTGAAGCAGGCTGTGTGGGTGTTTTTTTGCGAGAGCAGGTGGATGCTGCTCTCAGCATGGATGGGGAATGAAAGCAAAATATGAGATTAGCTGCAAGACTGTTCATTTTACACTGTCACAGAATAACGGACTCAACTACAGCTGCTGAAGTTCATTTCTGTCCACCTTACTGGACCTATCTCAATGTTACAAGCACAGTGTACTTTCTTGAGTTGCTGTAGTTTGCTGTCAAGGTGTATTAACAGAATCTTAGTTTAACTGGCCGGGTTGTGAACTGCAGCCACCAGTGTATTCTTGAGAAAAAGAGGCTGCCACGAGGCTTGTCCCCTCGATGAGAAGGTGAGCGGCCACCTCAGCCACCAATGCTGAGCCAAGCAGACTGCAAAAATGAGTCTGTTTCAACAACTGAAAGGCAGTTGCAAAAAGTTGTTTGACATGGCTGTTTGGTCTCAAAGCTGAATTTTGTCTTCCTCTGACACTATTTTACCTTGAAGATCCAAGAATTCCAGGAGCAGACAACTTAAGTGAATACCTATACCATCTGGAAAGCAAGCAGACTTACAGCTTTGTTATCCCCACAGCATACAGTGTCTTTTCTGTTTGTATTTCCTCATCTGGAATATGTCACTGAAATTAACATTTGATAACTTTGCAGCAAGAAGGAACAGAATTACTCATGGGCTCCACAAAACATGAAAATAGCTTAAAATACATACATAGCTCTCAATCTTCAGAAGTACTGGTTTTGCTACCTGTTTCTAAGGTTTCTTTCGAATTTTATCTTTTCTGCAGTTTTTGTTGTCTGTATAAAATCTTCCACATTGTGTAGTGAATCTATGTTCAAGTTCTACAAAGGGGTAAATTCAATTTTATCTTTTATTATTTACAG
Seq C2 exon
TGTTAAAATTTTTGAAGCCATGGGAGTAAAGGTCCAGAGACCTCGTTGCTTTTTCGACATAGCCATCAACAATGTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839:ENSGALT00000015996:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]