RnoINT0115970 @ rn6
Intron Retention
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55968676-55969207:+
Coord C1 exon
chr3:55968676-55968743
Coord A exon
chr3:55968744-55969129
Coord C2 exon
chr3:55969130-55969207
Length
386 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TCTACACGTTACACTCACAGACT
3' ss Score
5.48
Exon sequences
Seq C1 exon
GAACAAAACGATTGACTCAGTTATCCTTGGTGGGTTTTCGTTTTTTATTGTTTCCCCTAAACTGAAAG
Seq A exon
GTAATGTGCAAATTTTGTTCTCTAGTTTTACAGACTTAATGTAGAATTCTGTATGGGATAGCAATCTTTGGTTGGTAAAATAGAAATTTATATGATAATGACTGCTGTCTTTTGGAGCACATTTATTAAAATTGGAATAATAAAGAAGATTAGTATAACTCCTGCCCAGTAATTAACTATGCTGTAATCTTTAAAGTATTTTCTCTTTTCCTCAAAGTATAGTCTAATCTCCAAGAATCATAATGAGTTATCCCAAGGAAACAAATGTAAAATAAATTCAACAGCATTTGTAGTTGTTGTGCAATAGATTTTGCTTTTCGACATTAATAGAAAGTCCTTGCCGTTTTTGTTAGCTAACCTTAAAACTCTACACGTTACACTCACAG
Seq C2 exon
ACTGAAGTGTCGGAACCATGGGAATAAAGGTTCAGCGTCCTCGATGTTTTTTTGACATTGCCATTAATAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673:ENSRNOT00000010216:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]