BtaINT0116353 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3966800-3970385:-
Coord C1 exon
chr25:3970293-3970385
Coord A exon
chr25:3969464-3970292
Coord C2 exon
chr25:3966800-3969463
Length
829 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GGTCTCCCCCTTCCCAGCAGCTG
3' ss Score
6.15
Exon sequences
Seq C1 exon
GAAGCAGCTCTTGCTGCCAAGTTTACGGAGGTTAATGCCATCAACAGACAGAGACTGCAGAACCTGGAGTTTGCACTGACCCTCCTGAGACAG
Seq A exon
GTAATGGGTCTTAGGAAGGCATCCTACTGAAAACTATCCCAACAGCTAAGACACTAGGCTCGCTCTGCCTCAGAGAAACAGAGGTGGCCAGAGGGCGTGTGCCCTCGCTGGCAGGGCAGGGCAGTGGGTGGGTGACTGAGCCAGGGTCTGTCCACACGATGGAAAACGATCGAACTGTCGCACGACAATGTGGTCTTCTCTGGCTGCTGCAGATTCTCTCATAAGCGCAATCAACAGGGTACATGCAGATTGGGGACCACCATTAGCGTGGAAAAGATAAATACACATTGCACACAAAAATATATGTGTGACAAAGGTGACTGTATCCTGTAGGATGCTGAGCTGCCTTGGTGGCTCAGACGGTAAAGAATCCGCCTGCAATGAGGGAGACCTGGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCTACCCACTCCAGTTTTCTTGCCTGGAGAATCCCCATGGACAGAGGAGCCTGGGGGGCTGCAGTCCATGGGGTCGCAAAGAGTCGGACACAACTGAGCGACTAAGCACAGCACAGCACATCCTATAGGAACAGGACCAGAAGGGACAGGTGGCCTTCACGTCATACCCTTCTGTGGCTTTAAGATGTTTCCCCAGATGTGTTTAAACTAGTGTTTTTAATTTCAAAAGGAAGCCTAGGGCTCTACCGGCCCCGACACTGAGCAGGGGGTGGGGGTGGGGATGTCCCTTGAGGACCACAAGACAAGCATTGTGAGCCTTGGAGGGTGGGGAGACGGGGACCAACTGCACGGAGTCCAGCCCTAACCCTGCATGGTCTCCCCCTTCCCAGCAG
Seq C2 exon
CTGGAGGCAGGTGCAAGCCAGGAGGCCCTGCCCGGGAGCAAGCCAGGCCCTGGAGCAGAGGAGACGTGGAAGATTCAGGAGGAGCTGGATGAGGAGATGGAGCGGCGGCAGCAGCTGGAGCACGAGGTCCGGAGCGCCCAGGAGGAGATCCGGGCCCTGCGGAGCCAGAGCCCGCAGGAGGCGGTGGTGACCAGGGAGGTGCTCAGGAAGGTGCCGGACCCAGCACTGGAGGAGAGCTTCCAGCAGGCGCAGCAGACCCTGGCCGAGGAGCAGCACAAGAACCGGCTGCTGCAGGGGGAGGTGGAGGCGCTGCGGCTGCGGCTGCGTGCCCTGGAGGAGGCGGCCCGGGCCGGGGGCCAGGAGTACGTGGTCAAGGAGGTACTGCGCATTGAGCCGGATCGGGCCCAGGCTGACGAGGTCCTGAGGCTGCGGGGGGAGCTGGAGGTGCTGCGGCGGCAGAAGGGCGCCCGCGAGGCGGAGGCGCTTCTCCTGCAGCAGCGCGTGGCCGCCCTGGCCGAGGAGAAGCGGCGGGCGCGGGAGGTGGTCACAGAGAAGGAGGTGGTCAAGGTGCACAATGACCCCCAGCTGGAGGCCGAGTTCCGGCAGCTGCAGGAGGACCAGCAGCGGGAGCAGGGGCTCCGGGAGAAGCAGGAGGAGGAGCTGGGCTTCCTGCAGGACAAGCTCAAGAGGCTGGAGAAGGAACGGGCCATGGCCGAGGGCAAGATCACAGTCAAGGAGGTGCTCAAGGTGGAGAAGGACGTGGCGGCTGAGCGGGAGGTGGGCGCCCTCCAGCGCCGGTATGAGGATGAGGCCGCCAGGGCCCGTGCCAGCCAGAGGGAGAAGACCGAGCTGCTCCGGAAGATCTGGGCCCTGGAGGAGGAGAACGCTAAGGTGGTTGTGCAAGAGAAGGTGCGCGAGATTGTCCGGCCTGACCCCAAGGCTGAGAGTGAGGTGGCCAACCTCCGCCTGGAGCTGGTAGAGCAGGAGCGCAAGTACCGGGGGGCTGAGGAGCAGCTCAAGAGCTACCAGAGCGAGCTGGAGGCGCTTCGGAGGCGAGGCCCCCAGGTAGAGGTCAAGGAGGTGACCAAGGAGGTCATCAAGTACACGACGGACCCTGAGACGGAGAAGGAGCTCCAGAGGCTCAGGGAGGAGATCGTGGACAAGACCCGCCTCATCGAGAGGTGTGACCTGGAGATCTACCAGCTGAAGCAGGAGATCCAGTCCCTCAAAGAGGCCAAGCCCCAGGTGCAGACCAAGGAGGTGGTCCAGGAGATCTTGCAGTTCCAGGAAGACCCCCAGACCAAAGAGGAAGTGGCGGCTCTGAGGGCCCGGCTGGCTGAGGAGCACAAGAAGCAGGTAGACCTGGAACGGGAATGCGTGTCACAGGAGGAGAAGATCCAGGAGAAGGAGGAGGAGCTGGCCCGCGGGAAGGAGGTGGTGGTGCAGCAGGAGGTGGTCAGGTACGAGGAGGAGCCGGGCCTCCGGGCGGAAGTGAGCGCCTTCACCGAGAGCATCGATGCAGAACTGCGGCAGATCGACGGCCTCCGCGGCGAGCTGCGGCGGCTGCAGCGCCGGCGAGCCGAGCTGGAGCACCAGCTGGAGGAGCTGGAGCGCGAGCGGCAGGCGCGCCGCGAGGCTGAGCTGGAGGTGCAGCACCTCAAGCAACAGCTGGCCCAGCTGGAGGCGCAGGAGGGCGAGGCCCACGAGAAGGTGACCCTCACACAGAAGGTGGTGCTGCAGCAGGACCCCCAGCAGGCCCGGGAGCATGCCCTCCTGGCCCTGCAGCTGGAGGAAGAGCGGCACCGCCGGCAGGGCCTGGAGCGCGAGCTCGAGACCCTAAAGCAGCAGCTGGAGCACCTGGAGAAGATGGAGGTCAAGGAGAAGGTGGTCTTCTCCGAGAGCGTCCAGGTGGAGAAAGGCGACACCGAGCAGGAGATTGAGAGGCTCAGGGGCAGTCTGGAGGCTGAGAGCCGAGGCAAGAGGGAGCTGGACGCCGAGGTGAGCCGGCTGGAGGCCAAGCTGTCGGAGCTGGAGTTCTGCAACTCTAAGTCATCCAAGGAGCTGGACTTCCTGAGGGAGGAGAACCACAAGCTGCAGCTGGAGCGGCAGAGCCTGCAGCTCGAGGCCCGCAGGCTGCAGTCGGAGATCGAGATGGCCAAGGCCGAGGCGCAGAGCCTAAGAAGCCTGCCCACAACGACTGGAGCCGACCCCGGGGCGCAGCTCGACTCACGCCTGCGGTCCCTGGAGCGGGAGCTGGACGACCTCAGGAGGCTCTCCAGGGACAAAGACCAGGAGATCGAAGAGCTGCAGCGTCGCCTGGGGTCCGTGGCCATCAAGCGGGAGCAGAGGGAGAACCACCTGCGGCGCTCCATTGTGGTCATCGACCCTGACTCGGGCCGTGAGCTGTCCCCCGAGGAGGCCCACCGCGCCGGCCTCATCGACTGGAACATGTTTGTCAAGCTCAGGAGCCAGGAGTGCGACTGGGAGGAGATCTCCGTCAAGGGCCCCGGAGGCGAGTCCTCCGTGATCCATGACAGGAAGTCCGGCAGGAAGTTCTCCATTGAAGAGGCCCTGCAGAGCGGGCGGCTGACCCCCGCGCAGTACGACCGCTACGTCAACAAGAGCATGTCCATCCAGGAGCTGGCCGTCCTGGTGTCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178:ENSBTAT00000002822:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGGTTAATGCCATCAACA
R:
GTTCTTGTGCTGCTCCTCGG
Band lengths:
351-1180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]