GgaINT0013036 @ galGal4
Intron Retention
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13254973-13258358:-
Coord C1 exon
chr14:13258266-13258358
Coord A exon
chr14:13257640-13258265
Coord C2 exon
chr14:13254973-13257639
Length
626 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AACTACACACTCTTCTTCAACAA
3' ss Score
-4.97
Exon sequences
Seq C1 exon
GAAGCTGTTCTGGCAGCCAAGTTCACCGAAGTGAATGCTGTGAATAGGCAGAGGCTGCAGAACCTGGAATTTGCTCAGAGCCTCCTGCGGCAG
Seq A exon
GTAAGACATCCCCCACACACAGAGGCTCAGGACTTGGCTGTGCTGTGTGGCTCCTGAGGGTCAGCTCACTGCGAGCTCGAGGTCTTGGCTTAGATCTCTGCGTGCTGCAGGCAGGCAGCTTGACACAGCTGCAACAGGCTGTGGCAGCATGATTCTGTGAGAATATTCACAAGAATCACACACACATGTGCCTTTGCCATTACAAGCTGAAGTGAAAATGAATCTAGCTAGCGTTTCATGCCCCTAAACCCAGTCAGCAGACACCTCAATGAAGTGCTCTGCCTGGGATCAGGCAGAAGCTCTCCACATTTTCCAGTTCCCACTCATCCTTGGAAGCTCTGTGTTATTTCTAACACTTTATGCCTAGCCCATACCAGAATGTACATCTCTCAGAGCTTAAAGCTTTGTTGGGACAGCAACGGGTATCACTGAGAGCGATTTCCAGGCCAGGAATCCACAGAGCAGTTCAAGAAACACCCATCTGCAAATCCACCCTGTTGAGTGTTTGCAATAGGCAGCCTCCATTAACCCAGATCAGCATCCTCCTGTAGTACTGTCACAGGAGTGAGTGGAAAATAAAATAACCGAATGAGCTTATTGGTGCTTAACTACACACTCTTCTTCAA
Seq C2 exon
CAACAGCAGCCAGAGGCTCAGGTGACGCAAGACTTCATCCAGACCAAAAAATCTGTAAGGCCTGTGGAAGAAGTCTGGAAGTTGAAGAAAGAGCTTGAGGATGAGACTCAGCGTCGGCAACAGCTAGAAGCAGAGATCCAAGCCATCAAGAACAACATTGTCCACCTACAAAACCAGAAGCCCCAGGAAACCGTAGTTAAGAAGGAACTGGTGAAGAAAGTGCCGGACCCGCAGCTGGAGGAGAGCTTCCACAAACTGCAGCAAAGCCTGGCGGAAGAGCAGCGCAAGAACCAGGTGCTGCAGGATGAGCTGGAGGCCCTTAAGATCAGGCTGCGTGTTTTGGAGCACGAGAAGAAGGAAGGAGGGCAGGAGTATATAGTGAAAGAGGTGCTGCGCATTGAGCAAGATAAGGCTCAAGCTGAAGAAATCTTGAGGCTCAAAGAAGAATTGGAAGAGCTCAGGAGGCAGGAAGGAACCAGGGAAAACGAGGTTATTCTTTTACGCCAGCAAATCGCTGTGCTGTCCAGCGAGAAGAACAAAGAGCAGGAGAAGGTAACAGAGAAAGAGGTGCTGAAGCTGCAGAACGATCCCCAGCTGGAGATGGAGTTCCGGATGTTGCAAGAGAGCAAGCAGAGGGAGAGTGCTCTGAGGCAGAAACACGAGGAAGAGCTCAGCTTCCTCCAGGAGAAGCTCAAACGCCTCGAGAAGGAACGGGCCATCGCTGAGGGCAAGATTACTGTCAAGGAGGTGTTAAAGGTGGAGAAAGACGTGGCCATTGAGAGGGAGGTGAATGAGCTCCGGCGCCAGTACGAGGATGAGAAATCCAAGGGGCGTTCCAATGAGCGGGAGAAGGCCGAGCTGCTCAGGAAGATCCAGCTGCTGGAGGAAGAGAACGCCAAGGTGGTTGTCCAGGAGAAGGTGAGGGAGATTGTGCGGCCAGATCCTAAGGCTGAAAACGAAGTCGCCAACCTTCGGTTGGAGCTGGTAGAGCAGGAAAGGAGATACCGGGGTGGTGACGAACAGCTGAAGAGCTGTCAGAATGAACTGGCTGCTCTGCGGAACAGAGAGCCGCTGGTAGAAGTCAAAGAGGTCATTAAAGAGGTCATTAAGTACAAGAATGATCCAGAAACCGAAAAGGAGCTACAGCGGCTCCGCGAGGAAATCATAGAGAGGACGGCAGCAATTGAAAGAGCTGACCTTGAGATCTACCAGCTGAAACAAGAGATACAAGCTTTGAAAGATACCAAACCTCAAGTGCACATGAAGGAAGTTGTTCAAGAAATTCTGCAGTTCCGGGAAGACCCGAAGACAAGAGAGGAGGTGGAATCTCTGAGAGTGCAGCTGGCAGAGGAACAAATGAAGCACGTTGACCTGGAGAGGGAGCGGCTCCTCCAAGAAGAGAAAGTAAGACAGAAGGAGGAGGAACTTTCCCAGGTGAAGGAGAAAGTGGTCCAGCAGGAAGTAGTGAAGTACGAGCAAGATCCCGCCTTGAAAGCTGAAGTGAACTCCTTCTCGCAGAGCATTGAGAGTGAGCTGAAACAGATTGATTCCCTCCGTGAAGAACTGCGCAAGCTGCAGAGGAGGCGGTCTGAGCTGGAGCGACAACTGGAAGAACTGGAGAAGGAGAGACAGGCCCGCAGAGAGGCGGAACTGGAAGTGCAGAGGCTGAGGATTAGGTTGAACGAGTTGGAAGAGCAGGAGAGGGAAACGACAGAACGAGTAACAGTGAAACAGAAAGTGATCCTCCAGCAAGATCCCCAGCAAGAGAAGGAGCACTCCCTCCTCAAGCTGGAGCTGGAAGAAGAAAAACACCGGAGACAAGTCTTGCAAACTGAACTGGAAGCCTTGAGAAAGAAGCTCCTTTCGTTGGAGAAAATGGAGGTCAAAGAGAAAGTTGTCTTTTCAGAGAGCGTCCAAGTGGACAAAGGAGATACGGAGTATGAGATTCAGAAGTTGAAGAGCAACCTGGAGGAGGAGAGCAGACGTAAGAGGGAGCTAGATGCGGATATCAATAGGCTTGAAACCAGGCTGTCCGAGGTGGAATTCAACAACTCGAAGTCATCGAAGGAACTAGACTTACTAAGAGAGGAAAACCACAAATTACACCTTGAAAAGCAGAACCTGCTGATGGAAACAAGGAGGCTGCAGTCAGAGATTGAACTCACAGCAACAGAAGCTCGGGATTTGAGAAACATGACCCACATGGACAGCGGACCAAACCTCGACTCCAGATTCCAAGCTCTGGAAAGAGAGTTAGATGATCTGAAGCAGCTATCTAGAGAAAAAGACGCAGAGATAGAACAGCTCCAGAACCGCCTCAAGACGGTGGCCATCAAGAGGGAGCAAAGAGAGAACCACCTGAGGCGCTCCATCGTGGTCATCGATCCGGACACAGGCAAGGAGATGTCTCCAGAGGAAGCTCACGTGCTCGGCCTCATCGAATGGAGCCTCTTCGTCAAGCTGAAGAGTCAGGAATGCGACTGGGAAGAGATCTCAATCAAGGGGCCCAATGGGGAATCATCCGTGATCCTCGACAGGAAATCAGGCAGAGAGTTCTCCATCGAAGATGCCCTGAAGAGCGGCAGGCTGAGCACGGCCCAGTACAACAGTTACCTCAACAAGCAGATGTCAATCCAGGAGCTGGCGGTCTTGGTGTCTGGAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCTGGCAGCCAAGTTCA
R:
TGCAGTTTGTGGAAGCTCTCC
Band lengths:
349-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]