DreINT0118313 @ danRer10
Intron Retention
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36317932-36321243:-
Coord C1 exon
chr3:36321151-36321243
Coord A exon
chr3:36321047-36321150
Coord C2 exon
chr3:36317932-36321046
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TATTTTATAATTCTTTACAGCAA
3' ss Score
7.36
Exon sequences
Seq C1 exon
GAATCTGCAATTGAGGCAAAATTCACCGAAGTAAATGCTGTGAACAAGCAGAGACTGCAGAACCTAGAATTTGCCCAAAGCCTTCTTAACCAG
Seq A exon
GTAAAACATGTTATTGTTCTGTATTATGTATATTCCAAACCATAGAGTAGTCTAAGGATTGCTCATTTACTTTAACGCATGCGATATTTTATAATTCTTTACAG
Seq C2 exon
CAACCAGAGGTTACAATAGTCAGGCAAGATGTCCAAACTGTGAGATCGTCTGCCCCAGGAGAAGAGCCCTGGAGAATCAAAAATCAGCTCCAGGAAGAAATTCAGCGCAGAGACCAACTAGAAAGGGAAATTCAAAGTGTCCAAAGTGACATCTATTTCCTGGAGGGCCAGAAACCACAGGATACAATTGTCAAGAAAGAACTTGTCAAGAAGGTGCCGGACCCTCAACTGGATGAGGAGTACCACAGAGTTCAGCAGAAGCTCCTGGATGAAAGCAGGACCACTCGGATCTTAGAGAGTGAACTGGACACCCTCCGTGTGAAGCTGCGTGGGATTGAGACCGAAATGAAAGAAGGAGCTCAACAGTACACAGTTAAAGAGGTGCTCCGCATTGAGAGGGACAGGGGACAGGAGGAAGAACTCAGGAGACTACGAGAAGAGCTGGAGGAGGTCAAGCGGATGAAGATGGTTAGAGAGAATGAAATCATTCAGATTAGAAAGCAAGTGACTATTCTTGCAGAGGAGAAGAGCAGGGAGCAGGAAATCATCAAAGAGGAGGAAGTCATAAAGGTTCAAAATGACCCTCAGCTGGAGAGTGAGTACAGAGTATTGCTTGAAAGAAAGCAAAAAGACATAGAAACCCGTAAGGAGCTTGAAGACGAGCTTCGATTCCTGCAGGAAAGACTAAGACGTCTTGAAAAGGAAAAGGCAATGGCTGAGGAAAAGATCTCCATCAAGGAAGTCCTGAAGGTTGAGAAGGATATTGCTTTGGAGAGAGAGGTAGAGAACCTGAGGAGACAATACGAAGATGAAAAAACAAGACGCAGTGCTGCGCTAAGAGAGAGAACAGACCTCCAGCGCAAGATCACCAGCCTGGAGGAAGAGAAGTCAAAGGTCATTATCCAGGAGAAGGTGCGTGAGATTGTCCGACCTGATCCAAAGGCAGAAACAGAGGTGGCGAATCTTCGACTTGACCTGGTGGAGCAGCAGAGAAGGTGCAGAGATTCAGAGCTTCAGCTGAGGTCCCTTCAGGATGAATTGACAATGCTGAGAAACAGAGGTCCACAGATTGAATACAAAGAGATCATCAAAGAGGTCATCAAATACAAGATTGACCCACAAACAGAAAGAGAGCTGGAGCAACTCAGAAATGAAATTGTGGACAAAACCCACCAAACAGAGAGGTTCGAAATGGAGATACTCCAACTCAAAGACGAGATTCAAAGATGGAAAGACACCAAGCCTCAGATTCAGACCAAAGAGGTTGTGAATGAAATCCTGCAATACAGAGAAGATCCTAAAACCAAGGAGGAGATCGAAAGCCTCAAGCGGAAACTGGCTGAGGAACAGAGGAAACGTTTGGAGCTGGAAAATGAAAGGGCCCTCAGTGAAGAAAAGATCAGGATCAAGAAGATCGACTTGTCACAGGTGAGGGAGAAACTTGTCCAGCAGGAAGTCGTGAAGATGGAGCTGGATCCACTCTTGAAGTCTGAATGTGACACCTTTTCTCTAAATATCAGCAATGAGCAGAAACAGAGAGAGATCTTGAAAGAAGAGCTGATCAGGCTCCAGCGTCAAAAAACTGAACTGGATGTTCAGCTTGAGGAACTGGAGCGTGAACGTAGAGCCCGCAGGGATGCGGAGCTCGAAATTCAGAGGTTGAGAGTGCGGCTTAATGAACTTGAGATCAGGGACAAGGAAAACAGAGAAAAGGTGACAGTAAAGCAAAAGGTTGTCCTTCAGCAGGACCCTCAACAAGAAAAAGAGCACTCTATCCTGCGCCTTCAGGTTGAAGAGGAGAGGCACAAGCGCATGCTCTTGGAGAAAGAGTTCAACGCCTTGTTGCAACAGCAGGAGATACTTGAGAGAACAGAAGTGCGTGAGAAAGTTGTGCGAACTGAAAAAATCCAAGTTGAGCGAGATCCAGATGCTGAGATGGATATTATCAGGCTAAAGAAAAGCCTTGAAGAAGAGGAAAGACGACGTCGTGAGCTGGACCAAGAGATTGTCACCCTAAACACAAAGCTTTCAGAAATGGAATTCACCAATACGAAATCATCAAAAGAACTCGACTACATTCGTGACGAAAGCAACAGGTTACAGCAGGAGAACCAGCGCCTACAAAACGAATTACGGAAGCTTCAATCTGAAATCGAAATCACAACAACAGAAACCAGACACATCACTGAGTCATCTCCGGTTGAGAGTAGCAGGAACTTGGAAATTCGAATGGAATCCTTGCAACGGGAACTTGCCGAGCTTAGACGCATCCGAATGGAGAAGGACGATGAAATCGAAAAGCTTCAGAAGAGTCTGGCTGCAATGCGAGTGAAGAGGGAACAGCGAGAAAGTCACCTCCGCCGTTCAATCGTCGTCATTGATCCAGACACCGGAAAGGAGATGAAGCCCGAGGAGGCTTACAAGCTGGGCCTAATCGAATGGAAAATGTTTGTCAACCTTCAAAGTCAAGAGTGCGATTGGGAGGAGATCACCGTCAAGGGTCCAAGTGGCGAGTCCTCCGTTCTTCACGACAGAAAATCAGGCAAGAAGTTTTCCATTGAAGATGCTCTGAAGGCAGGAAACATCACAAACCGTCAACTGCAACAGTACCAGAACAAAGAAATCAGCATCCAAGAGTTTGGCGTCATGCTGTCAGGCAGAGGCAAATGAATCCATTAATTAGACAAATACAACCAATTTTATATTCTGTTTACTAGTATTAAGATCTAGAGTAAACATGCAGTTTGCAGTCCCAAATTGCATTTTTTTATTCCCTTTCTCAATACAGTATGTATTTATTTTCAAATGCATTCTTATACCAATGCAAGAAGGTGTTTCTTTGGTTATGGTGCTGAATTTGGGTTAATGTTTCTAACGCTATTCCTGAAATGTTTTCATTGGAGTGTAGCAGATGAGACACTATGATCATATTTTACTGAAATCGAGTTCAGTTTTACTGTAATCTGATCTAAAATATGCATACAAGTGTGTGCCTTAATGATAACGTAAGGACCCTATCTGTCTCTTTTCATGCACTTTTTTTTTCAGCTGTGTCAGATTAATCTGTTCTCCTTTCATGTTTGATTTGAGATTAAAAATGAAATATGGATAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043:ENSDART00000157729:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAAAGCCTTCTTAACCA
R:
CCGGCACCTTCTTGACAAGTT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]