MmuINT0124874 @ mm9
Intron Retention
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5086384-5092030:-
Coord C1 exon
chr16:5091938-5092030
Coord A exon
chr16:5089922-5091937
Coord C2 exon
chr16:5086384-5089921
Length
2016 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
CGTTGTCTTTTCTGCCACAGCAA
3' ss Score
8.67
Exon sequences
Seq C1 exon
GAAGCTGCTCTTGCTGCCAAGTTCACAGAGGTTAATGCCATCAACAGACAGAGGCTACAGAATTTGGAGTTTGCACTGAATCTCTTGAGACAG
Seq A exon
GTAATCCATCTTAGTTAGAAATACTACTTCTAATTGTCCTACAAGATGGAAAGCAGTTTCCTCTGCCTTAGAGACACAGCCTGAGAATGACGGGAGTGTCTTCTGCTGACACTTTTGAGAAGGATTAATGCTAATGCTAAGCTAAACCAGCCTTCTTCACTAGCTTGGGCTAACTTCCATACCAATTCAAAAGATGTTTGCTGAGCACTTATCAAAGGCTTTTGTTTGCTGTTTAATGAGTGTTTTGCCTGCATGTATGTATGTGCACCACACATGTGCCTGGTGCCCAAGATCAGAAAAAGACAATGCATCCCTTAGAACTGGAGTTTCAGATGGTTGTGAGCTACCATGTTGGGTGCTAGGCATTAAACCTGGGTGCCCTTTAAGAGCAACAAGTGGTCTTAACTGCTGAGCCACCTCTCCAGCCCCCAGAGTTTTTTGGGAGTGGGGTGGGATGGGGTTTTTTGGGGAGGTGTTGTTTTGTTTCATTTTTTTCAAGACAGGGTTCTCTGTGTAGTCCTGGCAGTCCTGGAACTCACTCTGCTGGGATTAAAGGCATACACCACAACCACCGAGCTTCAAAGTTATTTTCAGTGGCATGTCTGTGTTTCTGTATGTGGATTTGCTTAAGTGCAGGAACATGGACATGCTTGCATGTGCAGGACAATGACAACCAAAGAGTCATCCGGAGGAACGCATTTACCCCTTTTAAGACAAGGTTTCCTATTGGCCCGGAGTTTACCAAGTAGGCTAGACTAGCTGGCCAGCAAGGCTCAGGAAGCTTCCAGTGTCCACATCCTTGATGCTGTGATTGCAGGTGTCGCTCCCCTAGAGCACCAGAGCCCTGCATTTCCCACCAGTGCTGGCGTCACAGCTCAAGTCCATATGCTTGCAGGGGATTCTCCCAGCCCCCAAAGTTATTTTAGGACTTGATGAAATTCATGACAGTATTATCTGACATAGAAAGGAACTAGAAGCAACTGACACTCCTCAGAAATGCTCTGGTTTAACCTGTCCACACGGTAGACATACTGCTGTTAAGCAATGTTGTGGCACCTTCTGAGCCAAGATGGTACTCTGCCCCTCCAGTCAGAAACTGCAAAACAACAACTGTTTGCATAGAAAAAGCAATCACCTGGTGCTTCACCAAAACATATACCTAAAAAAAAAAAAAAAAAAATGTCTCCAAGGACAACAGACATCCCCTAGGGACAGGGCAGAGATGGGAAACTGGTGTCACTTCAGACTCCTCTGTGCCTACAAAACATTTTGCCTTATTCAATTTTTAAAAGCTTTAAAAAGTAACCCTAGAGCATTAGTGGAGGGAGACCCCAGAAGATCAGCCCATCCTGGTCTGGGTGATCAGACCTGTATCTATCTTCTCTCTCTCTCTCTCTCTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCACCATTTTATTTGCTTCAAATTAATGAATTTCTAAGTCAGGTTCAGGTAACACTGAAGGCCTTTATGAGGAGTTTATATTGTCTAGACCCAAGATATGCTGCAAACACAGTCTGATCAAGTAAAGTAGGAAATAACATTTTTCTAAAGACAGGCTTAGAAGCTGAAATCCAGTAATTGAAGATGTTTCCTCTCTGTGGCAGTGAGCTTGATTCATACCTGGCAGCAAGGCCCCATTCAGGGTATAGCCAAAAGGGCAGGGTACAGACCACCCAGAACAAAACCAACTAGTGCGCCCCATGTTGTGGTACAGGGTTCACAGTTCAAATCACCTGTCTGACTCTGGAAGTTGTTTAGTTTTTCTGGACATGATATTAAATATTAAATCATCTTTGCTAGTAATTGGTTTCCAACTTTCCATCTTGGACCACTCGGCAGAATGATGGCAGCTTATGGCTGCCTCCCCAGCTGCCTGTGCTTGCCCAGGTCCTCCCGTGCCCAAGTCTACCACAACCTTCACTAGGGTTGCCTGGGCTCCACCTCATCTGTTTGTTTCTTAACCATGCATTCGTTGTCTTTTCTGCCACAG
Seq C2 exon
CAACCAGAAGCAGGAGTGACCCATGAGACCCTACAAGGGGGAAAGCTAAGCTCTGGCATGGAGGAAACATGGAAGATTAAGAAGGAACTGGAGGAGGAGATAGAGCGAAGGCAACAGCTGGAAAATGAGGTCAAGAGTGCCCAGGAGGAAATCCAGACCCTGAAGGATCAGGGGCCTCAGGAGTCATTGGTGAGGAAGGAGGTGCTGAAGAAGGTGCCAGACCCTGCCCTGGAGGAGAGCTTCCAGCAGCTGCAGCAGACGCTGGCTGAGGAACAGCACAAGAACCAGCTATTGCAGGAGGAGCTGGGAGCACTGCAGCTCCGGCTGCAGGCTCTAGAGCAGGAGACCAGGGATGGGGGACAGGAGTATGTGGTCAAGGAGGTCTTGCGCATTGAGCCAGACAGAGCCCAGGAGGATGAGGTCTTGCAGCTTCGGGAGGAGCTGGAGGCACTGCGGCGCCAGAAAGGCGCCCGAGAGGCTGAAGTGCTACTCTTACAGCAGCGTGTAGCAGCCCTGGCTGCTGAGAAGAGCAGGGTGCAGGAAAAGGTCACTGAGAGAGAGGTGGTAAAGCTACAGAATGACCCCCAACTGGAGGCAGAATACCGGAGGCTGCAGGAGGAGCACCAGCGGGAGGGCACACTCAGGGAGAAGCAGGAGGAGGAGCTGAGTTTCCTACAGGCTAAGCTCAGGAGACTGGAGAAAGAACGAGCCATGGCAGAAGGCAAGATCACTGTCAAAGAGGTGCTCAAGGTAGAGAAAGATGCAGCTGTGGAGAGAGAAGTCAATGACCTCACCCGCCAGTATGAGGACGAGGCTGCCAAGGCACGCTCTGGCCAGCGGGAGAAGACAGAACTTCTCAGAAAGATATGGGCCCTGGAAGAGGAAAATGCTAAGGTGGTGGTACAGGAGAAGGTCCGAGAGATCGTGCGGCCAGATCCCAAGGCAGAGAGTGAAGTGGCCAACCTCCGCCTGGAGCTGGTGGAGCAGGAGCGCAAATTCAGGGGTGCTGAGGAGCAGCTGAAGAGCTACCAGAGTGAGCTGGAGGCCCTACGGAACCGTGGACCACAGGTAGAAGTCAAAGAGGTGACCAAAGAGGTCATTAAATATACAACTGACCCAGAGACAGAGCAGGAACTCCAGAGGCTCAGGGAGGAGATCATGGACAAGACCAGGTTAATAGAAAGGTGTGACCTAGAGATTTACCAGCTGAAGCAGGAGATCCAGGCCCTTAAGGACACCAAGCCACAGGTGCAGACTAGAGAGGTAGTCCAGGAGATCCTGCAGTTCCAGGAAGACCCCCAAACCAAGAAGGAGGTAGAGTCTCTGCGTATACAGCTGTCAGAAGAACAGAAGAAACAGGTGGACCTGGAAGGGGAGCGGGCATCCCAGGAAGAGAAGATCAAACGCAAGGAGGAAGAGCTGGCACAGGGGAAGGAAAGGGTTGTACGCCAGGAGGTAGTACAGTATGAAGATGAGCCAGATTTGCGAGCTGAGGTGACTGCCTTCACAAACAGCATTGATGCTGAGCTGCGGCAGATTGATAAACTGCATGTGGAGCTACGGCGGTTACAGCATCGCCGAGCAGAGCTGGAGAGGCAGTTGGAGGAGCTGGAGCGGGAGAGGCAGGCACGTAGGGCAGCCGAGCTGGAGGTACAGAGGCTGCAACAGCGGCTGGCTGCATTGGAGCAGGAGGAGGCCAAGACTGGTGAGAAGGTGACCCACACACAAAAGGTGGTGCTGCAGCAGGACCCACAGCAGACCAGGGAGCATGCCCTGCTCCGAGCCCAGCTGGAGGAAGAGCGGCACCGGAGGCAGCTACTGGAGGGTGAGCTTGAGCCGCTGCGTAGAAAGTTGGCTGCCCTGGAGAAGGCAGAGATCAAAGAAAAGGTGGTCTTCTCTGAGAGTGTCCAGGTAGAAAAAGGTGACACTGAGCAAGAGATCCAGCGCCTCAAGAAGAGCCTGGAAGAGGAGAGCCAGAGCAAGAGGGAGCTGGATTCAGAGGTGACCCGGCTAGAAGCCAAGTTATCTGAGCTAGAATTCTATAATTCCAAGTCATCCAAGGAACTGGACTTCCTGAGAGAAGAAAACCACAAGCTACAGCTAGAGCGGCAAAACCTGCAGCTAGAGACCCGGAGACTCCAATCAGAGATTGAGATGGCAGCAACAGAAACTCGAGATCTGAAGAACATAACCACGATAGACTCTGGGACCCACCTAAACTCTAGGCTGTGGTCCCTAGAGAAGGAACTGGATGACCTCAAGAAGATGTCCAAGGACAAGGATCTGGAGATCGATGAACTACAGAGGCGCCTGGGCTCTGTGGCTGTCAAGAGAGAGCAGAGGGAGAACCACCTGAGGCGCTCCATAGTGGTCATAGACCCTGACACAGGTCGTGAGCTGTCCCCAGAGGAGGCTCACCGGGCTGGGCTTATCGACTGGAAAATGTTTGTGAAGCTCAGAAGCCAGGAGTGCGACTGGGAGGAGATATCAGTGAAAGGTCCTAATGGGGAGTCATCAGTAATTCATGACAGGAAGTCAGGCAAGAAGTTCTCCATTGAGGACGCTCTTCAGAGTGGCAGGCTAACCGCTGCTCAATATGACCGCTATGTCAACAAGGATATGTCCATTCAGGAGCTGGCAGTCTTGGTGTCTGGGCAGAAGTAGGCCCAGCCCTTCTTCCTGGCTTTTCTTGGAGCTGGATTATCTTAAAGATGGAGATGGTTAACTCATTCTCAGCAACTTCCTGGGTGTCTTCTGCTCCCGAGCCTTCATATAGACTTCTGAGCTAAGTGTTTTATCCACATTGTATCAGGCTGCTTACAGTGCAGCTACTGTAATACCAGCAGACACTAGCTGGGTAGCATCTCTCAGCTCAGCCTCATCCAGTCTGAGTGAGTGACCTGCTCCCACCTCTGATGACTTAATAACCTTTCTGCCTCTTTCAACTCAACAAGACTGGTCCACTGGGGCTGCTGACCTTCCTTCTTGCCATTCCATTTTTCTGACTGGGATCAAACTATCAACAGTGCCTGCTCAGTAGTGACTTTTCTCATTGAACAGGGCTCTACACTAGAACATGTGTCCAGAATCCACAATGCCTGGCTCTTGGTGCTAGAATAACTAGCCAGGATGTGCCAGAAAGACAGGCACCAACAACAGTTTGCTAGTTCTGAAAAGATCTTAGTAATGGATGGTGTGCTAGCCTTACTTTCAGTGCCTTAGAAGTCTTCATCATTATCGCATTGGCATTTAGATATACAAAAGTTGATTGTTCACCAAACAAATTTCTGCTTCTCTGTATTTCATGTATTATGTAAGAAAATGGGAAGTGATAGGGAACTTTATGGCATGAAAATAAAAATCTGGTGGCTTGACTCTAACTCACAGCAAGTATGACTCCTTTACATATGAGCCTGAACCTTGGCTCTCAGCCACAATGGGCGGGCATTCCATGAACACCAGGGCTCCTATGTACTGAAGAATAATAAAATAAATAAAATATTGCAAATAAAATAGTAATGAAAAAATGAGGAAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-Ppl:NM_008909:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0068115=Plectin=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: