BtaINT0118572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019682 | PRRC2A
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr23:27483597-27484706:-
Coord C1 exon
chr23:27484232-27484706
Coord A exon
chr23:27483788-27484231
Coord C2 exon
chr23:27483597-27483787
Length
444 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTATCTTTTTTTCAATGCAGTGG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GATCGCGGGGGCCCTCCCTGCAAGCCCCCAGCACCCGAAGACGAGGATGAGGCTTGGCGGCAGCGGCGAAAGCAGTCTTCGTCTGAAATCTCCCTGGCTGTGGAGAGGGCTCGGCGCCGGCGAGAGGAAGAGGAGCGGCGCATGCAGGAGGAGCGCAGGGCAGCCTGTGCCGAGAAACTCAAGCGACTTGATGAGAAGTTTGGGGCACCTGACAAGCGGCTCAAAGCAGAGCCTGCTGCACCACCTGCTACCCCTCCTGCTCCCGCTCCACCACCTGCAGTCCCCAAAGAACTCCCAACGCCTCCAGCTCCTCCACCGGCCCCTGTTCCAACACCTGAAAAAGAACCGGAAGAGTCGGCACAGCCCTCTCCTGCCCAGTCCACCCCCACTCCAGGTGTGGCTCTGGCTCCCACTGCAGTGAGTGGTGGGGGCAGTGCCAATAGCACCAGCAGTGGCAGCTTCGAAGCCAGTGCAG
Seq A exon
GTATGATGGAGGTGGTGATGGGTAGATCTTCTGTCTGCTTGGGGTTGAGGGTGCAGGTGGTAAGGATGTGAGTAAAGGAGATAAAAGGCAGTTTGGGTTCGTTGGACTGTCACTGGTATGGGTGAAATGGATCTTTTTGCTTCTGTGGACATCTGAGGGGAAAAGGTTTTCTTACCTGAGTTCCTGAATAAGTAGTAACCTAAAACCACTTCCCTATAGGCCTAGAGTGAAGCAGGCCGAAGGAAGTGTTACTTTTGATGATTTCATGGGAAATTAACGCCACCACCATTGGCTTTTGAGAGACCTTGAAGTGTTTTCATGGGTTTTAAATGGGATAGTCTTATTTCTAGAGGGGCTGCTAGAAGTGAGTGCTGAAATTATGGGGTGTTCATGGAATATCTGTTGGTGGACTAGATCGCTCTGATTATCTTTTTTTCAATGCAG
Seq C2 exon
TGGAACCTCAAGTGCCCTCAAAAGAGGGTCCTGAACCACCAGAAGAGGTTCCTTCCCCTGCCACACCCCCAGCCCCAAAGGCGGAACCCAAGGGTGATGGAGTTGGTCCCACCCGGCAGCCCCCCAGCCAAGGCTTGGGCTATCCCAAATATCAGAAATCATTGCCTCCTCGTTTCCAGCGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019682:ENSBTAT00000026236:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGAAACTCAAGCGACTT
R:
ACCTCTTCTGGTGGTTCAGGA
Band lengths:
356-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]