MmuINT0023916 @ mm10
Intron Retention
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35158393-35159413:-
Coord C1 exon
chr17:35158936-35159413
Coord A exon
chr17:35158584-35158935
Coord C2 exon
chr17:35158393-35158583
Length
352 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CACCCTGTTCTTCAATGCAGTGG
3' ss Score
7.38
Exon sequences
Seq C1 exon
GATCGAGGGGGTCCTCCCTGCAAACCCCCAGCACCTGAGGATGAGGATGAGGCATGGCGGCAGCGTCGGAAGCAATCTTCTTCAGAGATCTCCCTGGCAGTGGAACGAGCTCGAAGGCGCAGAGAAGAGGAAGAGCGACGCATGCAGGAGGAGCGCCGGGCAGCCTGTGCTGAGAAACTTAAGCGTCTTGATGAAAAGTTTGGGGCACCTGACAAGCGGCTCAAGGCAGAGCCTGCAGCCCCACCTGTTACCCCTGCTGCCCCAGCTCTACCACCTGTAGTCCCCAAAGAAATTCCTGCAGCTCCAGCTCTGCCACCAACACCTACCCCAACACCAGAGAAAGAACCTGAAGAGCCGGCACAAGCCCCTCCTGTGCAGGCCGCCCCCAGTCCAGGGGTGGCTCCAGTTCCCACTCTGGTGAGTGGGGGTGGTTGCACTGCCAACAGCAACAGCAGTGGCAGCTTCGAAGCCAGCCCAG
Seq A exon
GTATGAAGAAAGGGATGGGGCTTACTGGGTGTCAAGTCTGCTAGGCTTAAGGGGATAGTGGGTAGTAAAGATGGGTGTCAGTGGGAGAGAGTGCTAGGTTACGCTATTGAACTGTGAGTGGCGGGGTATGTGGGAGGAGAATCTAAGCATCTTGTAGAACAGAACTTCTGGTTCCTGTTTTGTGTTTTCTGGTGGTGTCACAGGAATACTTGACACTTTAAAGTATTTCTATGGTTCTTAAACAGGATGGCCACTTATTCAGTTCGTATTTTGTTAAATACTTAACTGGGGGTGGAATTTCTGGGATGTTTGACTGTTGTAATGGACCAAGTCACCCTGTTCTTCAATGCAG
Seq C2 exon
TGGAACCCCAACTGCCTTCAAAAGAGGGTCCTGAACCACCAGAAGAGGTTCCTCCACCTACCACACCCCCAGCCCCAAAGATGGAACCCAAAGGTGATGGGGTTGGTTCTACTCGCCAGCCCCCCAGTCAGGGCTTGGGCTACCCCAAATACCAGAAGTCATTGCCTCCTCGCTTCCAGCGGCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393:ENSMUST00000025253:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACACCTACCCCAACAC
R:
GGAAGCGAGGAGGCAATGAC
Band lengths:
342-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types