HsaINT1028150 @ hg38
Intron Retention
Gene
ENSG00000204469 | PRRC2A
Description
proline rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr6:31627765-31629334:+
Coord C1 exon
chr6:31627765-31628239
Coord A exon
chr6:31628240-31629143
Coord C2 exon
chr6:31629144-31629334
Length
904 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTGTGTTTTTTCCGATGCAGTGG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GATCGTGGGGGTCCTCCCTGCAAGCCCCCAGCACCTGAAGATGAGGATGAGGCATGGCGGCAGCGACGAAAGCAGTCGTCATCTGAGATTTCCCTGGCAGTGGAGCGGGCCCGGCGACGGCGAGAAGAAGAGGAGCGGCGCATGCAAGAAGAGCGCCGGGCAGCCTGTGCTGAGAAGCTCAAGCGACTCGATGAAAAGTTTGGGGCACCTGACAAGCGGCTCAAAGCAGAGCCTGCTGCCCCACCTGCTGCCCCTTCTACCCCAGCTCCACCACCTGCAGTCCCTAAAGAACTCCCTGCACCTCCAGCTCCACCTCCAGCATCAGCCCCAACACCAGAGACAGAACCTGAAGAGCCAGCACAGGCCCCTCCTGCCCAATCTACTCCTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGAGTGGTGGTGGCAGTACCAGTAGCACCAGCAGTGGCAGCTTCGAAGCCAGCCCAG
Seq A exon
GTATGGAGATGGGGATAGGTACTACCAGATGTCAGATCACTGCTTCAAGGTGCTTAAAGGTGCAGGGTGGTAAGGCTGGGGATAAATGAAGTAGAAGGCAGTTGTTTTGGTTTATTGGACTATCAGTGATAGTGTTCTATCATTTGTATATCTGAAGGAGGGAAGGTTTTGTCTGGAATCTTAGGTTGTAGTCTAATACCATTTCTTGGCAGAGTACTGTAGCTCACGCCTATAATCCCAACACTTAGGGAGGCTTGGGGTGGAGGATCGCTTGAGCCTAGGGAGTTTGAGACCAGCCTGGGCAACAAAGCAAGACCCTGTCGGCCAGGCATGGTGGCTCACACTTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCAGAACATGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATAGTGAAACCCGTCTCTACTAAAAATACAAAAATTAGCCAAGTGTGGTGGCATGTGCTTGTAGTCCCAGCTGCTTGGGAGGCTGAGGTAGTAGAATCGCTTTAACCCGGGAGGCAGAGATTTCTGTGAGCCAAGACCATGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAATCCTGTCTCACAAGAAATACATAAATAAAAATGAAAACTATTTCCTATAGGCCAAGACTGAAGAAAGTACTGTTGTTCTAATGGTTTCATAGAAAGTTAATGCCACCACCATAGGCTCATGAGAGGCCATGAAGTGCTTTAATGGGTCTTAAATGGGAGGGGCTTCAATAGAATAGATGTTGAATAGAATATTTTAGTCTTAAGGGAGCTAGAGATGAGACGTGAGATTCCTGGGGTGTTCATGGAGTGTCTATTGTTGGACTAGATCACTCTGTTGTGTTTTTTCCGATGCAG
Seq C2 exon
TGGAACCACAACTGCCCTCAAAAGAGGGTCCTGAACCACCAGAAGAGGTTCCTCCTCCTACCACACCCCCAGTTCCAAAGGTGGAACCCAAGGGTGATGGGATTGGTCCCACCCGCCAGCCCCCTAGTCAGGGCTTGGGCTACCCCAAATATCAGAAGTCGTTGCCTCCTCGTTTCCAGCGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469:ENST00000376007:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGCAGTCCCTAAAGA
R:
GTAGCCCAAGCCCTGACTAGG
Band lengths:
349-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains