BtaINT0118600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101615835-101617905:+
Coord C1 exon
chr11:101615835-101616153
Coord A exon
chr11:101616154-101617711
Coord C2 exon
chr11:101617712-101617905
Length
1558 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCAATTACTTGTTCTGTAGGCT
3' ss Score
6.32
Exon sequences
Seq C1 exon
CAGAAATCCTCCATGGGCACTGTATTTCGGCAGCAGTCTGCCGAGGACAAAGAGGACAAGCCCCCACCGCGGCAGAAGTTTGTCCAGTCTGAGATGTCCGAGGCTGTGGAGCGAGCCCGGAAGCGCCGGGAGGAGGAGGAGCGCCGTGCGCGCGAGGAAAGGCTGGCTGCCTGTGCTGCCAAACTCAAGCAGCTTGACCAGAAGTGCAAGCAGGCTCAGCGGGCCAGCGAGGCCCAGAAGCAGGCGGAGAAGGAAGCTCCCCGCTCTCCGGGGGCTGAGAAGGTGACTCCCCAGGAGAACGGCCCTGCCGTCCACAAAG
Seq A exon
GTGAGCAGTGAGCCTGGCCCCTGACCTGGAAACAAGGGCTGTGTCACTGGGCATCTCCCTGGCTTCTTAGCATGAACTGTGGCCAATGGCTGGATACACAGGGATCCCAGTTGTTAAGAGTTCAGGCCTGGATCAGGGGCCTGGGTTCACGTCCTGTTTTCACCACTGAAGCCAGCTGGCCACGTGCTTCCCCTCTGACAGCTCCCCTCTGACTTCCCACTTTCCTCGCCCATGAAGTGGGTTGGGGAGAGTTTGTACCCACCTCCTGTGCTCAGGGTCCTGGGAGATGATGTCACGAAGCACATGGCACATTTCTACATGCAGAAGCACCCGCCTTCTCACGGGTGCTTCTAACGAAGCACTGTCTTCGTTACCACTACTGCTTGGCAGAGGAGATGTGGGTGCCGGAGGACCTCAGTAGGAGCACAGCACTCTCTGTGACGCTGAAGGAAGCCTGCCCACTTTTTAGAATACATTTTCCCTGATGTTATTCCTAAAAGGACTGGATCACGTGGCTGCACTAGAGACACCAAACAGTGTTAAGTGGTGAAGGGTGTCTCTTGCTCTAGTTTTTAATAATATGATCAGTTATGTTCTTTGTGACTTTCTTAAATGAACTTAAACAAAGTCTCTAAAGTAGAGAAGGGCCTGATGTTAGTTTTAGTTGCTGAAAGCTTCTCAGATGGAGGGCGTACCAGTGACCTGGTGGTCATCAGCGCCCTTTTGGCCGAGGAACTCAGATGCTGGTCCTTCTGTAAATGCTGTGTCACTGAAGTCTGGGTGAAGCCTGGGCCCAGTGTCAGGGACCTACTGAGGGGGCAGTAGAGAGTCAGGGAGTGGACCGCAGGGTGTAGAGTGGGCCTGGGTGTGGGATGTGTCCCCGGCTCTTCCATATGCCCCCTGCCCATCATCAGTCCTCTGGAACGCTGCCCTACCTCCAGGCTTTGCACTGGTGTTTGCTCTCTGCAGTAGATTTCTTAAGAATGGAAACGTCAGTTATAATAAAGCTGGAAAAAAGAATGCAAAGCTGGGATGGGGAAGACAGCAGGGGATTCCAAGGGGCACAGTCTTGGAGATGGTGGGGAGCATTCCATTTGAAGTGCACTCCGTGGACTGGCCCAGTTAATGCTCACAGAAGCCTCGTGGGATAGTTGCAGCTGTCGTCCTCAGAGGGGCTGCCTGGCTGGCCTGACTCACATAAATGGATGGAGGTGGGGGCACGTGGGCTCCCTTTGAGGCCTCATCCACTCTGTTGCGCTGGGTCCATTTTAATAGACCCTCTCTCACTTGGAATTGTATCCCAGCTCTACTGCCGACCGTGCGACTTCAGGCAATTCATCTGATCTCTCCACCCTTCGTTTTCTAATCTGTGATGGGGGCCAGGGGGAGGCTGTGAGCTTGGGCATGGGAAGTGTTAGCCCAGTGCTGGGGTTTGGGGATGCAAATAGTTTAGCAGTGGAAAGTATGTGCCTACAAGAAAAAGCATTTGCCATTAAATATTCACTCAGCCAAGCTTTCATGAACTGACCTGGCCACTCCCCAATTACTTGTTCTGTAG
Seq C2 exon
GCTCCCCTGAGTTCTCTGCCCAGGAGACCGCCAGCACGTTTTCAGAAGAAGCCCCCACAGCTCCTCCAGCAGTGGCTCAGAGCGGCGGCAGTGAGGAGGGGCCCCGGGAGGCTGGCTCCCCTGCACAGGAATTCAACAAGTACCAAAAGTCACTCCCTCCCAGATTCCAGCGCCAGCAGCAGCAGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGCCGAGGACAAAGAG
R:
GGGGGCTTCTTCTGAAAACGT
Band lengths:
342-1900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development