HsaINT0016670 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131464763-131467753:+
Coord C1 exon
chr9:131464763-131465078
Coord A exon
chr9:131465079-131467562
Coord C2 exon
chr9:131467563-131467753
Length
2484 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTGCTGGTATATTCTCTAGGCT
3' ss Score
7.31
Exon sequences
Seq C1 exon
AAGTCATCAATGGGCAGCATGTTCCGGCAACAGTCCATCGAGGACAAGGAGGACAAGCCCCCACCAAGGCAGAAGTTCATTCAGTCAGAGATGTCCGAGGCGGTGGAGCGAGCCCGAAAGCGCCGGGAAGAAGAGGAGCGCCGAGCCCGGGAGGAGAGGCTGGCCGCCTGTGCTGCCAAACTCAAGCAGCTGGACCAGAAGTGTAAGCAGGCACGAAAGGCAGGTGAGGCCCGGAAGCAGGCAGAGAAGGAAGTGCCCTGGTCTCCAAGTGCTGAGAAGGCATCTCCCCAGGAAAACGGCCCTGCTGTCCACAAAG
Seq A exon
GTAAGAGCTGGGCCGTCTTCCCACCAACTGGAAACCCTGGCCTGTTGTCCTCGTCTTGTTACTTGCAACTGCCTTCCTTCTTAGCTAGCAGAACGTATGGCTTACAACGAGATCGTATTGGGAAGCATCAGTTATTAAGAGCATAGGCCTGGGTCAAATGCCTGGGTTCTGATCCTATTTGAACTTCTTTTTTATAATTTCAACTTTTACTTTAGTTTCAGGGGGTACATTGTGTGATGCTGAGATTTGGGGTATGAATGATCCTATCACCCAGGTACTGAGCATAGTACCCAACAGGTAGTTTTTCAGCCCTTTTTCCTTCTCCCATCTGAACTTGTTAAACTAGCTGGTGAGCACCTCACCTCTCTGAAGCCTGTTTCTTCATCTGTGAAATGGGATGAGTATGTACCTGCCAGCACGCGGAGGGGTGTACAGCACGCTCCAGTTTCTGGGACATTGAAACCATGCATCTACTCACTGATGATACTCATCATCGTCACTATTATCCTCGCTATCCCTGCCTAATCAAAGACACGTGTGCTCTAGGACTTTAATAAAACCACAGATCCTTTAACATGGAATAAAAATAAGCCCACTTGCTTGGTAGAATACATTTTTTCCTGGTGTTGATTCTAAAAGGAATGGATCACATGGCCCTATTTTTTTTTTGAAATGGAGTCTCTTTCTGTCACCCAGGTTGGAGTGGTGTGATCTCTGCTCACTGCAACCTCTGCCTGCCGGGTTCAAGCGATTTTCCCAGCTCAGCCTCCTGAGCTGCTGGGATTACAGGCGTGTGCCACGACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTTTGGAACTCCTGGCCTCAAGTGATCCACCTGGCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGTGCCTGGGCAACACGGCCCTATTTAAGAGTAATGAAGCAGTGCTCTATAATGCAGAGTGTCTCTTGTAGCAGTTTTGAAGAATATAATCAGCTGTTTTCTTTATAATTTTCTTAAATAAACTCAGATCAGCTCTTGTTAGGAGACAAGGGGATGTTTGAGGCTCTGAAAGCTTCTCGGGTTAGAGAGTCCTAGTGCCCTTCTGGCCAGGGAACTCATTTCTAGTTTTTCTTCTGCCCTCCTTTCATTAAAGGTTGAGTGAGGACTGTGCCACTCTTATAGGAAAGTTGCACTGAGCATTTTCTGCCTGTCAGGCACTGTTTTCAGTATATTATTGTAATTAATTCAATTCTTACAGAAACCCTTGGTGAACACATGGTAGTTATTCTTATTTGCAGATGAAGAAATGGCCAAGGAGAGCCTGAAAAATGTGCCTAGGTCACATAGCCTTTCTCTTGTTTTTGTTTTTTTCCTCTTTTAAAAAAATGTTTTTTCCTTTATATCCTTGCCAGCAGGAAGTCATACACAGCATTTCCATATGTTGAGTTCCTGCTGTTCAGATGTTGGATATGTGGGCTGTCACTGAGTTCATGGCTGTTCTCTATCAGTCCTTTTTTTTTTGCTGGGGGGAGATGGAGTCTTGCTCTGTCACCTAGGCTGGAGTGCAATGGTGTGATCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCTCACCTCAACCTCCCATATAGCTGGGATTACAGGCGAGCGCCACCATGCCTGGCTAATTTTTGTACTTTCTTTTTTTCTTTTTTTTTTTGGAGACGGATTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCACCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCTGGCTGATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTGTATCTCCTGACCTCGTGATCCATCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGTCATTTTTTGTACTTTCAATAGAAATGGGGTTTCACCATGTTGGCGAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCTTATTAGTCCTTTTTAATAAAACATCTTCCACCTGAAGTCACATCTCAGCTCTGCCACTGACCGTGTGACCCTGGACGTCATCTAACCTCTTGACCCTTAGTGTCCTAGTCTGTAAGGTGACAACAGGTGAAGCCTCCTCACATGTGTTGTGGGGAGTCCCTGAGCTTGTGTACGTGATGCGTTTGGCACAGGGCCAGGGTTCAGGGACGTGACTGTTCTAGCAGTGGAGCGTACGGGCCAACAGGAAGAAGTACTTGTTTGTAAACACTTGGTTGGCTGAGCTTCTGTGAGCTCACTGTGTCATTTCTCTGCTGGTATATTCTCTAG
Seq C2 exon
GCTCCCCAGAATTCCCTGCCCAAGAGACCCCCACCACATTCCCAGAAGAGGCACCCACAGTGTCCCCAGCAGTGGCACAGAGCAACAGCAGTGAGGAAGAGGCCAGAGAGGCTGGGTCCCCTGCACAGGAGTTCAAGTATCAGAAGTCCCTTCCTCCCCGATTCCAGCGCCAGCAGCAGCAACAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains