RnoINT0118621 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11221459-11223921:+
Coord C1 exon
chr3:11221459-11221774
Coord A exon
chr3:11221775-11223679
Coord C2 exon
chr3:11223680-11223921
Length
1905 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTCCTTCCCTTTTCTCTAGGCT
3' ss Score
12.38
Exon sequences
Seq C1 exon
AAGCCCACAATGGGCAGCATGTTCCGCCCACAGTCCATCGAGGACAAGGAGGACAAGCCACCCCCACGGCAGAAGTTCATCCAGTCAGAGATGTCCGAGGCCGTGGAACGAGCCCGAAAGCGCAGGGAAGAAGAGGAGCGCCGGGCCCGGGAGGAAAGGCTAGCTGCCTGTGCTGCCAAACTCAAGCAGCTAGACCAGAAGTGCAGGCAGGCTCAGAAGGCCAGTGAGACACCGAAACCAGTGGAAAAGGAGGTCCCCCGATCCCCGGGCATTGAGAAGCTCTCCCCACCAGAGAACGGCCCTGTTGTCCGTAAAG
Seq A exon
GTGAGAGGACTCCTTATACCCCACAGCCGGGAGCCTTGAACTGTTGACTCTGCTTCACTGGCCATGAGGTTGCCAGACCTGTGGCTAAAGCACATTATGCTGGGAAAAGGCAGAGACAGGCTCTCTGTGAGTTAATGTCAGCCTGGTCTGTATAGAGTTCCAGAGCAGTTGATAAGACCCAGTCTTAAACACATGCACACACGCATGTGACAGATGTGGGCCTGGGACCTTGTCTGGTCCCACGTCAGCTGTTGGTCTAATTTTTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCATGTGTGTGTGTGCATGTGCGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTAGGTCAGAGGACAGCTTTGTGGAGTCAATTCTTCCTATTGCACTAAGCCATCTTGCCACCCCATCTTGACTTTTTTTTTTTTCTTTTTGGTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCATCTTGACTTTTTAATGATCTGGGTAAATGTCTCACATGTTTACAAACCATCTATAGATCTTCATCTATAGACGTGTCAGACTGACAAGGTAGCTCAGATTGTCACTAAGCCTGATAGACCCGTGGTGGAACACGTAGCCGCAAATCGTTCTCTGACCTCCATTGTGCTATGATGTCTGCATGCATGCTAACACAGACACAGATGTAAATTCATTTCAAAATGTGGGTAATGGAGACGGAGCCCAGTGGCTGCCCGGGTCGTTCTCACGGTCATCTGAGTGTAGTTCCCAGTATGCATGTGGTGGCTCATAGCCATCTCTAACTCCAGATCCAGGAGATCGGATGCCCTCTTCTGGTCTCACTAGCTGCCAGGCACATACATCATGCACATAAATTCAAATAAAATAAATCCCCCCAAAAGTTTGTGTGCCTGCCTGCCAGACTGTGATGCCCGTGTCAGGTGCCTTACTCGAAGCTTGTGGCGTACAGAGACTCCATCTTGCTGTCATTGTTGCTTCCTGTGCTGCTCAACCAAACGTGTGGCAGGGAGCCTGTGGAAAAAGGGGAGCATTGTTTCACGGGAAACGAGAAGGGGTCTTTCCAAATGTTGGATATACTTCTGGCAGTAACAGTTCCAATAGGAGTGGCTGCCGTCTGTAATGAGCCGCAGGACTGAAGACGTCCTCCATTGGCTATATTCTGTGACAGTCCCCCCAGTCAGCTCAGGGAGACTGACTCTCGTGAGCTTCAGCCCCTGTAAAGTCCTGTAAACCACACGTGTCGAGGTGTGTGGCCATCTTATGCTATTAGTACCCTTCCGGTGTCGGGGACGTGCCCGTGTCCTCATGACGCCAGCTCTCTGCAGCCTGAGTAGAGACTGCCCGCCACAGTGCTTATGGTCATGGCTGTGCAGAAACTGTTTTGAACAAGCTGTTAGTTGGTCTCTATTCAGTGCAGGATCTCACTGGATCTTTCCTCAAGTTCTGGTGAGGAGACACGGTTGCTCTCAGCACTCAGACTGCGTTGAACAAGCAGGGCTGAGGAAAGACTCAGGCTTCCCACCTGCGTTCGTTGAATCCTTTGTGTTCGGATGATGAATGTGCAAGTGGTCACTGAGTTTGCGCTGCTCTCTCCGCTCCTGTGTTGTTGTTGTTGTTATTGTTGTTGTTTTTGGGGTAGGACCCTCTCTCTGTGCTTTGTGAGAAATTCATGAGCCCACAGAGCACTGGGTGGAGGCCACTACACCTGGGTCGGTGACTTGGTCCCCAGTGGAGTGTGTGCGGCGGTTGACCGAAGCCCTTGCTCTTCACCACACAGTTGGCTGCGCTCCTGTGAGCTCGCTGAGACTTTTCCTTCCCTTTTCTCTAG
Seq C2 exon
GCTCCCCAGAATTCCCTGTGCAAGAAGCACCCACCATGTTCTTGGAAGAGACACCTGCAACGTCCCCAACAGTGGCTCAGAGCAACAACAGCAGCAGCAGCAGCAGTAGCAGCATCGAGGAGGAAGTCCGGGAGGCTGGGTCCCCTGCACAGGAGTTCAGCAAGTACCAGAAGTCCCTTCCTCCCCGTTTCCAGCGCCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCGAGGACAAGGAGGAC
R:
CGTTGCAGGTGTCTCTTCCAA
Band lengths:
345-2250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]