GgaINT0123920 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6821644-6822773:+
Coord C1 exon
chr17:6821644-6821959
Coord A exon
chr17:6821960-6822597
Coord C2 exon
chr17:6822598-6822773
Length
638 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TTTTATTTTCCTCTCTCCAGCAA
3' ss Score
9.9
Exon sequences
Seq C1 exon
AAGCCTTCACAGGGAAGTGCTCTCAGACAGCAGTCCCTTGAGGATAAAGAAGAAAAAGTGCCACTGAGACAGAAGTTTGTGCACTCTGAGATCTCTGAGGCTGTTGAACGGGCTAGGAAGCGACGGGAGGAGGAAGAGCGGCGAGCCAGGGAGGAGCGTCTGGCAGCCTGTGCTGCCAAGCTGAAGCAACTTGATCAGAAATGCAAACTGGCTCAAAAGAGTGGGGAGACCCAGAAACACACGGAGAATGAAGACCTGCGACCCCCAAACACAGAGAAAAGTGCCGTGCAAGAAAATGGTCATGTTTTCCGTAGAG
Seq A exon
GTACAGAAGCATTACTTGCCTTGTAAAAACTGATTTATTTATTTATTGGTATTATGCTGATCTTTCACCTGAATTGTGGGGGAATTCCTGGGAGGGAGCATTTGGGGATGATGCCTAAGAGATGAGCTGCCTTATGTATTCTGTGGAGTATTTTGAGGGTTCCCTTGAGGGGAGAGAAGGAAGGAAAAAAAAAAAAAAAAGCAATTTAACTATTAAAAGAAGCACAAACTTCTGTGGTTATTTTAACCATGCTCAGTTAGCTGTGCTATCGGAGATCTTGTTGGAGTGGGCCTCCTAGACTTCTCACGGTTGGATGATGCTCTTTGTGATGAGGCCACTGGTCACAAAATCATTTTATTAGGAAGTGCTGACAAATTTAAGGAGTAACAGAGCAAATGGACTTTGTCCTTTAGTGCTGAAGCAGAAGGCTGATAGCAGAGGGGGATCTCAAAATCTGTCACTAAAACAAGAACTGTCAGGGCAAATCACAGATTGTGAGGTGCTACATGTGACTAATAAAGTTCAACCACGTAACACAATTAGGATGTGCTCACAGTTGGGTGTATTTTGCTCTGGTGGTGTACACACAAACCGTGTCATGGGCAGGACTCATCAAGGTTTTATTTTCCTCTCTCCAG
Seq C2 exon
CAACACCTGAGTTTCACACGCAGGATGTCTCTGGCTATCTGGAAGAGGAGACTCCTGCCCCAGCGGCACCCCAAAGCAGCAGTGAGGATGAACTCAGAGAAGCTCCATCCCCAGCACAGGAATTCAGCAAATACCAGAAGTCTCTTCCCCCACGATTCCAGAGGCAACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.934 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGAAGTGCTCTCAGACA
R:
ATAGCCAGAGACATCCTGCGT
Band lengths:
346-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]