GgaINT0123920 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6194701-6195830:+
Coord C1 exon
chr17:6194701-6195016
Coord A exon
chr17:6195017-6195654
Coord C2 exon
chr17:6195655-6195830
Length
638 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TTTTATTTTCCTCTCTCCAGCAA
3' ss Score
9.9
Exon sequences
Seq C1 exon
AAGCCTTCACAGGGAAGTGCTCTCAGACAGCAGTCCCTTGAGGATAAAGAAGAAAAAGTGCCACTGAGACAGAAGTTTGTGCACTCTGAGATCTCTGAGGCTGTTGAACGGGCTAGGAAGCGACGGGAGGAGGAAGAGCGGCGAGCCAGGGAGGAGCGTCTGGCAGCCTGTGCTGCCAAGCTGAAGCAACTTGATCAGAAATGCAAACTGGCTCAAAAGAGTGGGGAGACCCAGAAACACACGGAGAATGAAGACCTGCGACCCCCAAACACAGAGAAAAGTGCCGTGCAAGAAAATGGTCATGTTTTCCGTAGAG
Seq A exon
GTACAGAAGCATTACTTGCCTTGTAAAAACTGATTTATTTATTTATTGGTATTATGCTGATCTTTCACCTGAATTGTGGGGGAATTCCTGGGAGGGAGCATTTGGGGATGATGCCTAAGAGATGAGCTGCCTTATGTATTCTGTGGAGTATTTTGAGGGTTCCCTTGAGGGGAGAGAAGGAAGGAAAAAAAAAAAAAAAAGCAATTTAACTATTAAAAGAAGCACAAACTTCTGTGGTTATTTTAACCATGCTCAGTTAGCTGTGCTATCGGAGATCTTGTTGGAGTGGGCCTCCTAGACTTCTCACGGTTGGATGATGCTCTTTGTGATGAGGCCACTGGTCACAAAATCATTTTATTAGGAAGTGCTGACAAATTTAAGGAGTAACAGAGCAAATGGACTTTGTCCTTTAGTGCTGAAGCAGAAGGCTGATAGCAGAGGGGGATCTCAAAATCTGTCACTAAAACAAGAACTGTCAGGGCAAATCACAGATTGTGAGGTGCTACATGTGACTAATAAAGTTCAACCACGTAACACAATTAGGATGTGCTCACAGTTGGGTGTATTTTGCTCTGGTGGTGTACACACAAACCGTGTCATGGGCAGGACTCATCAAGGTTTTATTTTCCTCTCTCCAG
Seq C2 exon
CAACACCTGAGTTTCACACGCAGGATGTCTCTGGCTATCTGGAAGAGGAGACTCCTGCCCCAGCGGCACCCCAAAGCAGCAGTGAGGATGAACTCAGAGAAGCTCCATCCCCAGCACAGGAATTCAGCAAATACCAGAAGTCTCTTCCCCCACGATTCCAGAGGCAACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.934 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGAAGTGCTCTCAGACA
R:
ATAGCCAGAGACATCCTGCGT
Band lengths:
346-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]