DreINT0017293 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71260351-71262639:-
Coord C1 exon
chr5:71262324-71262639
Coord A exon
chr5:71260524-71262323
Coord C2 exon
chr5:71260351-71260523
Length
1800 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
CTGAATGTGCTTGTGTACAGAAG
3' ss Score
4.73
Exon sequences
Seq C1 exon
CAGAAGGCCAGTGTGAACAGTGAGTCTGCAGAGGAGCAGGATGAGCCCCAGCGGTCGGCTCCTCCTCGAGGGAAGTTCGTCTCAGCAGACGTCTCGGCGGTGGAGCGAGCCCGTCGGCGCCGCGAGGAGGAGGAGCGCAGGGCTCGAGAGGAGAGACTGGCGGCCTGCGCTGAGAAACTCAAGAAACTGGATGAGAAGTTTGGCAAAACGGAGAAACCTGCTCGCTCTGGAGAAGCAGACGGCAAGGAGCTGGCGCAGTCTCCCGCTCGCAGATCCGCAAAACCCCAGCAGGATGGCTGGCAGTACGGCTCCAAAG
Seq A exon
GTGCACCGCTCCACACTCACTCTTTATTCTGCAATTGATTCAGAGAGGTTTGCAAGTAGAGATAAAAGAAGCACTTACAGTCATTAGAGAGTTTCAGCATATACAGTTGAAGTCAGAATGTGAATTTTTGATATCTGCAGTCTGTCAAATTCAGAAGTTTAAACATGCATCTTAAAGGGCCATGAAAGCCCCTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTTGAAAAAAGTCAGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGGAGTGTCGGAGGAAGAAAAGAGGCTTGGTGTTCACACACACACACACACACACACACACACACACACACACACACACACACAGGGGAGAAAGTGACTGTTTACATGGAGATCTGTAGTCGAATTATTTGCCAAATGATTAAATGTTGGACTTTAACTGCAGTTTGGCTCTTTCATTCAGGGAATTCATTCATGTCCCTCCCGACAAATGAGATATTTGATTCGAGGAGCTGCTGTAAGCATGTATTTTTCATGCAATGTTTGATACCGCACGGCAAATGAGAGAAAAAAACTCAGCATTTCCCGGAGACTTAGATGAACACGGCAGGTAGCGTCAGAAAGCCGCGTGTGTTATTCCGGTCACTAAATGCGGTGAAAATCCTACACGAGGTTAAAGTTTGGTTGTGGTGCTAACATGTTTACTCTCGGTGCAATAGTTAACTTAGTTCGATACGAACAAACTGAATAAACAAATAGCACTGGTCGCTCACTTACCAAATCTGTAGAGACAGGACAATCACCAGCAACTAGAGCCGCGTCTTTATTAAGAGGAGACGAGCAGCGAATCCAGATCTCAGCGTTTGCAGATGAGAACAGCTCTCAGGTAAACAATAATCCTCCTTAGACACGTAAGTTATTGTTGTGGAGCGTCGCGTACACTGTTAATCCACACGTGACTCCAGCTGCGCTCTCACAGAGAGAAAATGAAAACAAAACTTCACTGCAGCAAACTATAAAAGCAACACTTCACGCTTGTTTTGCCAACACAACGTGGCGTCTCTGTCGTCTAAACACTGTGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTGGTTTGAACCAAGCCTTACTCATGCATTAATGCAGCACACTGTAAGACGTAATAAGACTCACTCTGGCACAGACGTCCAGTCTGCACGCTGCAATACACGCTATTATGTCATGACCGTGACGCAGCTTCAAAAATTCGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAAACAACCAATTTACACTTTTTAGTGAAAATATAGGCGTCCTAATAGTGTTTTTAGCAGTGTGAGACACATATACCACTGTCAACAGCTCAACACATGTGTTCTGGTGTTTCGTGACCCTTTAAGAAATTCAGCCTTCAATATTCATTTGTCTTAAACTTCAGATGTTCAATATTCAAGATCTGAAATTATAAGAAATTCAAATAAAAAAAAAATTCAGATTTATTCAATTACAATTGTCAATAATTCAAATGAACACAATTCAGATGGTTTTGGCATATGATTCGCTCCATACAGCTGTTTGTGCTTGTAACTACAGCACGTCAATGCATGTCAAAAAAAAGCTCATCAATCTCATCGGTTGAATAGTTTTTAACTTAAAACAGCACATCAAACCAAAAATACAATCCCATAATCATCATCCCAGTGTGCACCTCGTCAAAATGTCAGACTGTACCACAATATAGATGTCAGAAGCAGAGTGAGGACTGACTGAATGTGCTTGTGTACAG
Seq C2 exon
AAGTGACGGACACGCCAGCGGAGTCAGCCTCCAGTCAGGATTATAAAGATGAAGGCTGTAACTTCCACAATAATGATGATGAGGATGATGATGGTGGCGAGTCCACGTCTCCTGTGCCGGAGTACAGCCGACATCAGAAGCCTGTGCCGCCACGCTTCCAGAAGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCGAGGGAAGTTCGTCT
R:
GACTCGCCACCATCATCATCC
Band lengths:
358-2158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]