RnoINT0118574 @ rn6
Intron Retention
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5148918-5149923:-
Coord C1 exon
chr20:5149449-5149923
Coord A exon
chr20:5149109-5149448
Coord C2 exon
chr20:5148918-5149108
Length
340 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CACTCTGTTCTTCAATGCAGCGG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GATCGAGGGGGTCCTCCCTGCAAACCCCCAGCACCTGAAGATGAGGATGAGGCGTGGCGACAGCGTCGAAAGCAATCTTCCTCAGAGATCTCCCTGGCAGTGGAACGGGCCCGAAGACGCAGAGAAGAGGAAGAGCGACGAATGCAGGAGGAGCGCCGGGCAGCCTGTGCTGAGAAACTTAAGCGTCTTGATGAAAAGTTCGGGGCACCTGACAAGCGGCTCAAAGCGGAGCCTGCAGCCCCACCTGTTACTCCTCCTGCCCCGGCTCTACCACCTGTAGTCCCCAAAGAGACCCCTACACCTCCAGCTCTGCCACCAACACCAACCCCAACCCCAGAGAAAGACCCTGAGGAGCCAGCACACGCCCCTCCCGTGCAGTCCGCCCCCACTCAGGCTGGGCCTCCAGCCCCCACTCCGGTGAGTGGGGGTGGCACTGCCAGTAGCACCAGCAGTGGCAGCTTCGAAGCCAGCCCAG
Seq A exon
GTATGGAGAAAGGAATAGGGTCTACTGGGTGTCGAGTCTCTGCTGCTAGGCTTAAGGGGATACCGGGTACTGAAGATGGATGTCAGTAGGAGACAGTGACACGTTTAATGAATTCTGTGAGTGGTGGGATGTGTGGAAAGAGTCTAAAGTATTGTGTAGAACAAAACTTTACTCTTTTCTGCTTTTGCATTTTTTTGGTAGTATCACAGGAATACTTGAGGCTTTAAAGTACTTTTATGGCTTTTAAATAGGATTGGTATTTTGTTGAATACTTTAACTGGGGGTGGGATTTCTGGGGTATTTGTTGTGATGTGCCAGGTCACTCTGTTCTTCAATGCAG
Seq C2 exon
CGGAACCCCAGCTGCCTTCAAAAGAGGGTCCTGAACCACCAGAAGAGGTTCCTGCACCTACCACACCCCCAGCCCCAAAGGTGGAACCCAAGGGTGATGGCGTTGGTCCCACTCGCCAGCCCCCCAGTCAGGGCTTGGGCTATCCCAAATACCAGAAGTCATTGCCACCTCGCTTCCAGCGGCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852:ENSRNOT00000001133:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCTCCAGCTCTGCCA
R:
AAGCGAGGTGGCAATGACTTC
Band lengths:
355-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]