BtaINT0118597 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019682 | PRRC2A
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr23:27485117-27485534:-
Coord C1 exon
chr23:27485444-27485534
Coord A exon
chr23:27485334-27485443
Coord C2 exon
chr23:27485117-27485333
Length
110 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CACTGTTGGTCTCCTCACAGCAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
GGGCCCACGAGGAGGTCGACTACACTGAGAAGCTCAAGTTCAGCGATGAGGAAGATGGACGAGACTCCGATGAGGAGGGACCTGAGGGCCA
Seq A exon
GTGAGTTTAGGGCTCTCTGGGGAGTGGAGGGGCTGTTTGTCTTATGGTAGTGTACTCTTAAAAGAGCTGGGTTGCAGCTGATTTTAATTCCACTGTTGGTCTCCTCACAG
Seq C2 exon
CAAGGAGTCCCAGTCAGCTGGTGGTGAGGAACGGCCCCCTGAAGCAGATGGCAAAAAGGGCAACTCCCCCGGCAGCGAACCACCCCCTCCCAAGACGGCCTGGGCAGAGACCTCTCGGCCTCCAGAGACAGAGCCGGGGCCTCCTGCCCCAAAGCCTCCCCCACCCCCACCCCACCGAGGCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019682:ENSBTAT00000026236:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGTCGACTACACTGAGA
R:
GGAGGCTTTGGGGCAGGAG
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]