HsaINT0016664 @ hg19
Intron Retention
Gene
ENSG00000231825 | BAT2
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:13918]
Coordinates
chr6:31594549-31594975:+
Coord C1 exon
chr6:31594549-31594639
Coord A exon
chr6:31594640-31594758
Coord C2 exon
chr6:31594759-31594975
Length
119 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CACTGTTGATCTGCTCACAGCAG
3' ss Score
4.78
Exon sequences
Seq C1 exon
GGGCCCATGAAGAGGTTGACTACACTGAAAAGCTCAAGTTCAGCGATGAGGAAGATGGGCGAGACTCTGATGAGGAGGGTGCTGAGGGCCA
Seq A exon
GTGAGTTAGGGCCATCAGGGGAGAAGAGGAGGGGGTCTTGGTTTGTATTTTGGTAATATACTCTTAGAGGAGTATATTAGTTGCAGCTGATTTTAATTTCACTGTTGATCTGCTCACAG
Seq C2 exon
CAGGGATTCCCAATCAGCTTCTGGTGAGGAACGGCCCCCTGAAGCAGATGGCAAAAAGGGCAACTCCCCCAACAGCGAACCGCCCACTCCTAAGACGGCCTGGGCAGAAACCTCTCGGCCTCCAGAGACAGAGCCGGGACCTCCTGCCCCAAAGCCTCCCCTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231825-BAT2:NM_080686:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCCATGAAGAGGTTGACT
R:
GGTAGGGGAGGCTTTGGGG
Band lengths:
256-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)