DreINT0120715 @ danRer10
Intron Retention
Gene
ENSDARG00000031494 | prrc2a
Description
proline-rich coiled-coil 2A [Source:ZFIN;Acc:ZDB-GENE-010501-4]
Coordinates
chr19:27164170-27164548:-
Coord C1 exon
chr19:27164446-27164548
Coord A exon
chr19:27164369-27164445
Coord C2 exon
chr19:27164170-27164368
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
3' ss Seq
CTGAAGTTCTGGTTTAACAGGGA
3' ss Score
4.52
Exon sequences
Seq C1 exon
GAGCTCAAGAGGAAATTGACTACTCCGCGAAGTTGAAATTCAGTGACGATGAAGGAGAGGATGATGGGGAGGAGGAACGGGGTGAAAATAAAAATGGAACCCG
Seq A exon
GTAAACATTTCTAAAATTTTCTCCCATTAGTTGTTTTTAACTGTTTATGTTTGCTTACTGAAGTTCTGGTTTAACAG
Seq C2 exon
GGAGTCAAGGGAACAGCAGAGATCCCAAGATGGACCTGTACCTGTTTCACGTTCCAGGGCATCCGACAGTGGAGGGGATTCGCGACGCACCCCTCCTTCCAGTACTGAAGATGGCTCTGTGTCCCCCTCCAGCAAGCCAGGCTGGGCCGAGGAGGGAGGTAGCAGCTGGAACAGTCAAGCAAATGCCGGATCTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031494:ENSDART00000138675:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGATGATGGGGAGGAGG
R:
GGGACACAGAGCCATCTTCAG
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]