BtaINT0118720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020582 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr25:2179213-2179885:+
Coord C1 exon
chr25:2179213-2179294
Coord A exon
chr25:2179295-2179858
Coord C2 exon
chr25:2179859-2179885
Length
564 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTTTCTTTTGCCCTCAGCCA
3' ss Score
9.11
Exon sequences
Seq C1 exon
ATGGTGGTTCCCGCGACTCCCCCCCCCCTGGGGGCGCCCTGCCTCGGGGTCCTGGCCTCCCTGTTGATTCTGGCCGCTCCAG
Seq A exon
GTGAGTCCTGTGGGCCTGCTGGCCTGGACCTCCCCCACTGCCCACCCCGCACTTCCTCCCTGGTCCTGCTGAGTCCCTCCTCTCCTCCCCTCTGCTGTCTCGCTCTGTTTTGTAAGTTGCCTGCTCTGAGCCTCAGTTTCCCCTGCAGCCGTGAGAAGCACAGGAAACACTGCAGGTACCCGTAGGCCCGGTCAGCGCTCAGGGCTCTTGGCTCGGCTTCTGCTTTACCCTCTTCCCCTCCACTCCTGTCTCCCCTGTCTCCTCAGTCCACTGCTGGGGAGGCAGCATCCAGACCTGGGTTCTCATGCTCACCCCCTGTGAGACCCCCACCCCAGACCTGGCCCCCACGGCCCCCAGGGCACAGGCTGGACACAAAGCTACGGGGAGGCCGAGGCCGCCGCTCACAGCCAGGGCCTGAGGTTTCTGCCAGCCCTGCCCAGGCTCCGGGAAATGCCCCACCCGGGCAACGCGACCCTGAGGCCCTGGGACTCAGCCACTGGGGAGGGTTGCAGGGCACGGGAGAGCCCCTCCACCGGCCTGACCCTTTCTTTCTTTTGCCCTCAG
Seq C2 exon
CCACCATGGATGCTATCAAGACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020582:ENSBTAT00000021967:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]