HsaINT0132952 @ hg38
Intron Retention
Gene
ENSG00000005001 | PRSS22
Description
protease, serine 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr16:2856822-2858170:-
Coord C1 exon
chr16:2858023-2858170
Coord A exon
chr16:2856849-2858022
Coord C2 exon
chr16:2856822-2856848
Length
1174 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTTCCTTCTCTTGCCCTCAGCCA
3' ss Score
9.89
Exon sequences
Seq C1 exon
ACACACCCTGACCCGCATCGCCCTGGGTCTCTCGAGCCTGCTGCCTGCTCCCCCGCCCCACCAGCCATGGTGGTTTCTGGAGCGCCCCCAGCCCTGGGTGGGGGCTGTCTCGGCACCTTCACCTCCCTGCTGCTGCTGGCGTCGACAG
Seq A exon
GTACGTCCGGAGGCTGCTCCTCCCTCCTCCCTCTCACCTCCACCCTCCTTCCCTCCTTCCCTCCCTCCCTCTCTCCCTCCTGGCCTTGCCTCTCTCATCTCCTTTCCGCTTCTGCTCTGTTTATCTCTTGCTCCTTAACTGCTCTGTGCCTCGGTTTCTTCTACGGCTGTGAGGATGAAACAGAAAACGCAGCAAGTACGCAGCGCGCCTCGGTCTCCAGTTACCGTCGGCGTCGCCATCGCCTGCTCCCTCTCGCCTCCGTGTTCTCCCATCTCCTCGTCCTCCGCTGCTTGCCTCTGGGGAAGCACCGTTTTGTGTTGTTCCTGCCGCAGGAGGTCAGGGGAGGGCACACCAGCGGCAGCAGCGTCCAGAGCCGAGGGGCTCAGGTCTGTGCCTCCCTCGAGGAGCCGGTCCTGGTCCCCGGAAGGCAGGCTGGACGGGAAGCTGCGGGAGGGCAGGGTCACAGCTGTGCAGCCAGGGCCTGGCCAGGCCCCAGGAAATGCCCCGCCGGTAGGGGCCCTGGGGTTGAGAGACTTGAGAGTCTCCCTGGGCACTGGAGGGCTAGAGGTTCCTCACCACCAGGTACTCAAGGGGACCCCCTCCTCACTGGGCGCTGGGACGCCTGCTCACTGGGCGCTGGGACCCCTCCTCACTGGGCGCTGGGACCCCCTCCTCACTGAGCGCTGGGACCCCCTCGTCACTGGGCGCTGGGGACCCCTCCTCACTGGGCGCTGGGGAGCCCTCCTCACTGGGCGCTGGGGACCCCTCCTCACTGGGCGCTGGGGAACCCTCCTCACTAGGCGCTGGGGAGCCCTCCTCACTGGGCGCTGGGGACCCCTCCTCACTGGGTGCTGGGACCCCTTCCCACTGGGCACTGGACCCCTTCTCACTGGGTGCTGGGGGCTTCTCGCTGGGCGCTGAGGGACCCTCCTCACTGGGTACTGGGACCCCTCCTCACTGGGCGCTGAGGGACCCTCCTCAGGGGGTGCTGGGACCCCTCCTCACTGGGCGCTGAGGGACCCTCCTCACTGGGTGCTGGGACCTCCACCTCACTGGGCACTGGGATCCCTTCTTACTGGGTGTTGGGGGCCTTCCTCACTGGGCGTTGAGGGCCCCTCACCACTGTGTCCTGGGGCCCCTCACCGGCCTAACCGTTTCCTTCTCTTGCCCTCAG
Seq C2 exon
CCATCCTCAATGCGGCCAGGATACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001:ENST00000161006:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development