HsaINT0132952 @ hg19
Intron Retention
Gene
ENSG00000005001 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:14368]
Coordinates
chr16:2906823-2908171:-
Coord C1 exon
chr16:2908024-2908171
Coord A exon
chr16:2906850-2908023
Coord C2 exon
chr16:2906823-2906849
Length
1174 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTTCCTTCTCTTGCCCTCAGCCA
3' ss Score
9.89
Exon sequences
Seq C1 exon
ACACACCCTGACCCGCATCGCCCTGGGTCTCTCGAGCCTGCTGCCTGCTCCCCCGCCCCACCAGCCATGGTGGTTTCTGGAGCGCCCCCAGCCCTGGGTGGGGGCTGTCTCGGCACCTTCACCTCCCTGCTGCTGCTGGCGTCGACAG
Seq A exon
GTACGTCCGGAGGCTGCTCCTCCCTCCTCCCTCTCACCTCCACCCTCCTTCCCTCCTTCCCTCCCTCCCTCTCTCCCTCCTGGCCTTGCCTCTCTCATCTCCTTTCCGCTTCTGCTCTGTTTATCTCTTGCTCCTTAACTGCTCTGTGCCTCGGTTTCTTCTACGGCTGTGAGGATGAAACAGAAAACGCAGCAAGTACGCAGCGCGCCTCGGTCTCCAGTTACCGTCGGCGTCGCCATCGCCTGCTCCCTCTCGCCTCCGTGTTCTCCCATCTCCTCGTCCTCCGCTGCTTGCCTCTGGGGAAGCACCGTTTTGTGTTGTTCCTGCCGCAGGAGGTCAGGGGAGGGCACACCAGCGGCAGCAGCGTCCAGAGCCGAGGGGCTCAGGTCTGTGCCTCCCTCGAGGAGCCGGTCCTGGTCCCCGGAAGGCAGGCTGGACGGGAAGCTGCGGGAGGGCAGGGTCACAGCTGTGCAGCCAGGGCCTGGCCAGGCCCCAGGAAATGCCCCGCCGGTAGGGGCCCTGGGGTTGAGAGACTTGAGAGTCTCCCTGGGCACTGGAGGGCTAGAGGTTCCTCACCACCAGGTACTCAAGGGGACCCCCTCCTCACTGGGCGCTGGGACGCCTGCTCACTGGGCGCTGGGACCCCTCCTCACTGGGCGCTGGGACCCCCTCCTCACTGAGCGCTGGGACCCCCTCGTCACTGGGCGCTGGGGACCCCTCCTCACTGGGCGCTGGGGAGCCCTCCTCACTGGGCGCTGGGGACCCCTCCTCACTGGGCGCTGGGGAACCCTCCTCACTAGGCGCTGGGGAGCCCTCCTCACTGGGCGCTGGGGACCCCTCCTCACTGGGTGCTGGGACCCCTTCCCACTGGGCACTGGACCCCTTCTCACTGGGTGCTGGGGGCTTCTCGCTGGGCGCTGAGGGACCCTCCTCACTGGGTACTGGGACCCCTCCTCACTGGGCGCTGAGGGACCCTCCTCAGGGGGTGCTGGGACCCCTCCTCACTGGGCGCTGAGGGACCCTCCTCACTGGGTGCTGGGACCTCCACCTCACTGGGCACTGGGATCCCTTCTTACTGGGTGTTGGGGGCCTTCCTCACTGGGCGTTGAGGGCCCCTCACCACTGTGTCCTGGGGCCCCTCACCGGCCTAACCGTTTCCTTCTCTTGCCCTCAG
Seq C2 exon
CCATCCTCAATGCGGCCAGGATACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001-PRSS22:NM_022119:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)