RnoINT0118688 @ rn6
Intron Retention
Gene
ENSRNOG00000039698 | Prss22
Description
serine protease 22 [Source:RGD Symbol;Acc:1310880]
Coordinates
chr10:13373998-13374808:-
Coord C1 exon
chr10:13374648-13374808
Coord A exon
chr10:13374025-13374647
Coord C2 exon
chr10:13373998-13374024
Length
623 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTATTCTCTTGCCCTCAGCCA
3' ss Score
8.68
Exon sequences
Seq C1 exon
CCTGCTAGTCTCAACCAACACAGCCCTTAGGTGCTTTGGGACGGTCAGCAGCCTTGCTGGGTCTCCACCCCTACCTGCAATGGTGATTTCCAGACCTCCCCTAGCACTGGGTGGGGACCAGTTCAGGACCTTAATCCTTCTGGTGCTGTTGACTTCCACAG
Seq A exon
GTGAGCCCAGAGGACCTGCTCCTCCTCCGCACATCCTCTCCTCCCTCCTGCCCACAGTCACCTCCTGTTTGCCAGCTCAGCTCAGCTCAGCTCAGCTCCCTCCCTTGAGTTCGTTCTCTCTTCCTGCCACTGTCTCCTTTCATCTTGCCATGCCTCTGTCTCCGTTCCCCTTCCTCTGGCATGTGGTCTGACTCCAAGGCCCATGCCTCAGTTTCCCTAGCAGCTATGAGGATTGAATGCACGCGAGCTCCTCTCTCATCTGTGTGGGTTATCACACCCGTCAGCATCGCTTCCCTATGTCCTCCATCTCCTGCTTCCTCCTCCACGGTTTCCGTCCTGGGTCTCCTTCTGTTCTGGAATAGGAGGACAGCTGCCCTAGATTTCATGGGAGCTGGGGGAGAAAATCTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAGAGACTGAGAGACAGGTCATGGGACATCAAACACTGCTGGAGGGCCCAGGATGAGTCTGTTCTTGAAGGTAGGGGATCCCCAGGCATGGGGCACGGGGTTCATCACCACCAGGACTAACCCTTTTTATTCTCTTGCCCTCAG
Seq C2 exon
CCACAGTCAGTGCAGCCAACATCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039698:ENSRNOT00000060888:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGTCTCAACCAACACAGC
R:
GATGTTGGCTGCACTGACTGT
Band lengths:
182-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]