MmuINT0127425 @ mm10
Intron Retention
Gene
ENSMUSG00000045027 | Prss22
Description
protease, serine 22 [Source:MGI Symbol;Acc:MGI:1918085]
Coordinates
chr17:23997311-23998100:-
Coord C1 exon
chr17:23997923-23998100
Coord A exon
chr17:23997338-23997922
Coord C2 exon
chr17:23997311-23997337
Length
585 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTTATTCTCTTGCTCTCAGCTC
3' ss Score
8.35
Exon sequences
Seq C1 exon
ACACTACAGCCACCCGTCCTGCCAGTCTCAAGCAACACAGCCCTTAGGTCCTTTGAGCCGGCCAGCAGCCTTGCTGGGTCTCCACCCATACCAGCAATGATGATCTCCAGACCTCCCCCAGCACTGGGTGGGGACCAGTTCAGCATCTTAATCCTTCTGGTGCTGCTGACTTCCACAG
Seq A exon
GTGAGCCCCAAGGGCCTGCTGCTCCTCCTCCCCACATCCTCTCTTCCCTCCTCCTCCTTCCCACAGTCACCTCCTCTTCGCCAGCTCAGCTCAGCTCCTTCCCTTGAGTTCCGTCTCTCTTCTTTCCTCTGTTGCCTTTCATCATCGGCTCCCCATGCCTGTCTCCGTTCTCCTTCCTCTGGCATGTGGTCTGCCTCAGTTTCCCTAGCAGCTATGAGGATTGAATGCATGTGAGTGCTCTGGTCTCAGTGCCTGCTCAGGAGCGCCTCTCACCGCTTCCCTGTGCCCTCCATCTCCTGTTTCCTCTTCCTCCTCTATTTCCATCTTGGGTCTCCTTCTGTTCTGGAATAGGAAGGCAGCTGCCTGGGCTTTCATGGGAGCTGGGGGAGAAAACCTGGGTGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGGTGGTGGAGCAGCGAACAGTGCTGGAGGGCCCAGGCTGAGTCTGTTTGGGAAGGTGGGGGAGTCCCCAGGCATGGGGCACAGGGCTCCTCACCACTTTCTTTATTCTCTTGCTCTCAG
Seq C2 exon
CTCCCATCAGTGCTGCCACCATCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045027:ENSMUST00000041649:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGCCACCCGTCCTG
R:
GATGGTGGCAGCACTGATGG
Band lengths:
199-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types