BtaINT0118723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020582 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr25:2180911-2182702:+
Coord C1 exon
chr25:2180911-2181188
Coord A exon
chr25:2181189-2182544
Coord C2 exon
chr25:2182545-2182702
Length
1356 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TCTCTCCTCTCTGCTCCCAGTGC
3' ss Score
10.67
Exon sequences
Seq C1 exon
TAATCTGGACAAACCAACCCAGTTCTCTGTGCTGCTGGGAGCCTGGCAGCTGGGGAACCCTGGCCCAAGGTCCCAGGAGGTGGGTATCGCCTGGGCACAGCCCCACCCTGTGTACTCCTGGAAGGAGGGCTCCCGCGCTGACATCGCCCTGGTGCGCCTGGAGCGCGCCATCCAGTTCTCTGAGCGCGTCCTGCCCATCTGCCTGCCCGACTCCACCGTCCAGCTCTCTCCGGACACCAACTGCTGGATTGCCGGCTGGGGGAGCGTCCACGATGGAG
Seq A exon
GTGCGGCTTCTTCCGGGGCGGGGGTGGGTGGGGACAGAGGGTAGCAAACACTGGGAGATACAGGTCCCATGGGTGGCAAAGAACAAAGGCCAGGGGCCGAGCATGATCCAGAGGAAAAAAGATGGTCTGCAGCCCAGAGATGTGATGACCTAGAAACCAAGGTGGACAACTTCAGATCAGTTCTAGTTAAAAGGTAACTTAAGCTGTGTTCTGACTGCCAGATCAACCAGGCTATGAAGTGACATAGGAGAGACTGATAGAAGGTTTCTGGGGCTTCTCATGTAGCTCAGTGGTTAAAAATTCGCCTGCCAATGCAGGAGACACCAGAAATGCCGGTTCTATCCCTGGGTTGGAAAGATCCCCTGGAGAAGGAAATGATAACCTGCTCCAGTATTCTTGCCTGGAAAATCCCAAGAACAGAGGAGTCTGGAGGGCTACAGTCCATGGGGTTGCAAAGAGTCAGACACCACTTAGTGACTGAGCACACCCACTAGAGATTTCTATGGGGCCAAGCCCAAGCCGGTGAATATGAAAACAGCCCTGAGATTCCAAGTCAGAAATAGGTACCCCCTGGTGGCATCAGGACACAATTGCAGGCAAAATTCCCAGGAAAAAAAATGCAATCTCCAGAAGGGTAAAATATAATTGACAACCCAAGCCTGGAAGTTTGGAAAACCTCATCTAGAACACAGAGCAGATTAGAAAGTAAGAAGCAGAAAGGCTGTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATAGAGAGAGAGGGAGAGAGGAGAGACTAAGAAAGGACAAAATGTAAGAAAATGGGACTTAACCAGATTTCAGAAGAATTAAGAGAAATGACACCATTTTGGGTATCTGGGGAATCCCACTGACACTGAAGTTTCAGCCAGCCTCCCCATGGTCATTCTTAGGGGCTCCTGTGAAAGCTAGATTTATGGATTGGGGAACCTGACCAACCAACCCTAGGGTCTGCAATCCCTCTAGGGGATGGGGAGGTCCTTCAAGTCCCGATAACATTCAACACCAAGCGGCCATTAGTCTGTAGCAGTCCTCAACCTGGATAAAGTAGTGCCTGAGACAGGACAAGCAGGGTCATTGGTTTGAACCTTCTTGTGGGCATCAGAGATCTCATTAAAGGTTCAGAATTTCAAGCTGCACACTCCTTTAGGATTCAGTAGGTCCAGAGTGGAGTCCTGGAATTTGGGTTTTCTGCGGGCATCGTGGCCGAGCCTGACAGAGTTGATCCATTTACCCTTTGAGAAATGCTCCTAAGGGGGATGGCGGGGACTGAGGAGGCCAGCAGGAGAGCCTCCCAAGCCTGACTCTCTCCTCTCTGCTCCCAG
Seq C2 exon
TGCCCCTGTCCCACCCTCAGACCCTCCAGAAGCTGAAGGTCCCCATCATCGACTCAGCCACCTGCAGCCGCCTGTACTGGCGGGGAGCCGGGCAGGGCGCCATCACCGAGGACATGCTGTGTGCTGGCTACCTGGAGGGGGAGCGCGACGCCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020582:ENSBTAT00000021967:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCAGTTCTCTGTGCTG
R:
CAGTACAGGCGGCTGCAG
Band lengths:
344-1700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]