MmuINT0127428 @ mm10
Intron Retention
Gene
ENSMUSG00000045027 | Prss22
Description
protease, serine 22 [Source:MGI Symbol;Acc:MGI:1918085]
Coordinates
chr17:23994599-23996519:-
Coord C1 exon
chr17:23996242-23996519
Coord A exon
chr17:23994757-23996241
Coord C2 exon
chr17:23994599-23994756
Length
1485 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
ACTCTCTCCTCTGTTCCCAGTGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
CAATATGGACAAACCATCTCTGTTCTCAGTATTGTTGGGGGCCTGGAAGCTGGGGAGCCCAGGCCCAAGGTCCCAGAAAGTAGGCATTGCTTGGGTGCTGCCTCACCCCAGGTATTCTTGGAAGGAGGGAACCCATGCAGACATTGCCCTGGTGCGCCTGGAACACTCCATCCAGTTCTCTGAGCGGATCCTGCCCATCTGCCTACCTGACTCCTCTGTCCGTCTCCCTCCCAAGACCGACTGCTGGATTGCCGGCTGGGGAAGCATCCAGGATGGAG
Seq A exon
GTGCGGTTCCCCTCTAACTCCAGAGAGGTCCAGGATAGCTAGGGACAGAGGGTAGATGCCACTCAGACACAGATTCCAGGGATAGGAGAAGGTGGAGAGCATGTGTACACTATAGAGGCAAGAAAAGATGATTTGGGGACTGGAATAAGTGAACTCACAAGAAGTCAACTGCCAATTTTTAGGTCATGTCTAGTTGAGTCTTTGACAATATTTTAAAGCAACAATAGAGGCTTGTAGTAAGGAAGGGGATAAGGAGCAGGAGGAGGGGAGGAGGGAGGGAGGAAGGAAAGAGGGAGGGAGGGAGCGAAAGAGGGAGGGAGGAAAAGCTGGGCGTGGTGGCATACATCTTTAGTCTCAGCATTCAGGGGGCAGAGGCAGGCAGAACTCTGTGAGTTAGAGGCTAGCCTGGCCTACAGAGAGAGAGAGAGGGAGAGAGGAGAGAGGAGAGACAAGGAAAGACAGAGGGAGAGATAGAGACACAGAGAGAGGCAGAGAGACACTCAGAGAGAGACAGAGGGACAGACAGAGAAGTATTTGCAAGGCTATTAAGACAAGAATGAGTAGAAGTGATGGCAGGCTGGCAAGATGGAAATGTAGCCAGCACACGTGAGAATAGTCACCCCTGCTGGCAGCATCTTGAATAGTAAGCAAAATTCCCAGGAGGAAAGGCAGTCTACTTCAAACCAAGTCTGGAGGTTTGGAAAATGTCATCTACAATCAAACCAGATGAAATACAGAGTTAGAAGAGAAGCAAGAAGAAGGTAGGTGGTAGCTAGATAGACAGACAGAGCCTGGGACAGACAGAAACTGGGGCAGACAGAGCCTGGGATAGACAGACAGACAGAGCCAGGGATAGACAGACAGACAGAGCCAGGGATAGACAGACAGAGTCTGGAGTAGACAGACAGAGCCTGGGACAGACAGACAGAGCTTGGGATAGACAGAGCCTGAGATAGACAGGCAGAGCCTAGGATAGACAGACAGAGCTTGGGATAAGCCCAGACAAACATTAGTCATCTGTGGAAGACAACACAGCCGAGACCTAGAAGACAGGGTTTGCAGGAGAAACTGAGCACTGACAACAGGGAAGGAACAGAGCCTGGACCTGGGTCGAGAAGAATTGCTCAGGCATGGGCAGGCGCTGGAATTCTTCAGTTGCTGCCTTTCCTTGGGTCCTCAGAGTAACCCCAGGGAGGGTGTGGGGCAGATCAATTCAGAACCTAGGGGGTACCAACACACTGCCCTTGCAGGAAGTACAGAAACGCCACTGTGTTGTGTAGCCCTCCGTGGGCATCAGGGAGCTGACTGAAGACAGAATCTCCGGCTATGCATTCATGTTTGAATTCAAGAGGTGGAGAGCCTGGGATTAGAGTTTCTTAAAGCAGATCCACCCACCTTTGAGAAATGCTGCTGAGCAAATAGAGGAGACTAGATGCTCACACAGGGCCTGCTCACACAGGGCCTGACTCTCTCCTCTGTTCCCAG
Seq C2 exon
TGCCCCTGCCCCACCCTCAGACCCTTCAGAAGCTGAAGGTGCCCATCATCGACTCCGAACTCTGCAAAAGCTTGTACTGGCGGGGAGCCGGTCAGGAAGCCATCACCGAGGGCATGCTGTGTGCTGGTTACCTGGAAGGGGAGCGGGATGCTTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045027:ENSMUST00000041649:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCCCAGAAAGTAGGC
R:
AGGTAACCAGCACACAGCATG
Band lengths:
347-1832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types