RnoINT0118691 @ rn6
Intron Retention
Gene
ENSRNOG00000039698 | Prss22
Description
serine protease 22 [Source:RGD Symbol;Acc:1310880]
Coordinates
chr10:13371101-13373199:-
Coord C1 exon
chr10:13372922-13373199
Coord A exon
chr10:13371259-13372921
Coord C2 exon
chr10:13371101-13371258
Length
1663 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAC
5' ss Score
2.13
3' ss Seq
ACTCTCTCCTTCCTCCCCAGTGC
3' ss Score
10.61
Exon sequences
Seq C1 exon
CAATATGGACAAACCATCTCCGTACTCAGTATTGTTGGGGGCCTGGAAGCTAGGGAACCCAGGCCCAAGGTCTCAGAAAGTAGGCATTGCTTCGGTGCTGCCCCACCCCAGGTATTCTCGGAAGGAGGGGACCCATGCAGACATTGCCCTGGTGCGCCTGGAACGCCCCATCCAATTCTCTGAGCGGATCCTGCCCATCTGCCTACCTGACTCCTCTGTCCATCTCCCTCCCAACACCAACTGCTGGATTGCCGGCTGGGGAAGCATCCAGGATGGAG
Seq A exon
GTGCACACAGTTTCTCTCTAACTCCAGAGAGGTCTGGGATAGCTGGGGATAGAGGGCAGATGCCACTCAGATGCAGATTCCAGGGATAGGAGAGGGTAGAGACCATATGTATGTACATTATAGAGGAGAGAAAAGATGATTTGGGGACTGGAGAAGTGAACTCACAAGAAGTCAACTGCCAATTTTTAGGTCATGTCTAGTTCAATCTTTGACCATATTTTAAAGCACAATAGAGACTTGCAGCAAGGAAGAGTGTTAGGAGCAGGAGGAAGGAGGGAGGAAGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAAGCTGGGCATGGTGGCACACATCTTCAGTCCCAGCACCCAGGAGGCAGAGGCAGGCAGAACTCAGAGTTAGAGGCTAGCCTGGTCTACAGAGAGAGTTCCTAGGACAGTCAAGATTACATAGACCCTATGGGGCGGAGCGGGGGGAGGGACAGAGAGATAGAGAGACAGAGAGACACACAGAGACAGACAGAGACAGAGAGACACACACAGAGAGACAGAGAGGCATTTGCAAAGCTGTTGACACAAGAATGGGTAGAAGTGAAGAGCAGGCTGGCAAGATGGTGATGTAGCCAGCACATGTGGGAATGGTCACCCCTGCTGGCAGCACCTGTGAATAGCAAGCAAAATTCCTAGAAGGAAAAGTAGTTTTTTCCTATAAAGCCCAATTTTCAAACCAAGTCTGGAGGTTTGAAAAATATCACCTACGATCACAAAACAGGAGAAGCAGAAGTAGAAGAGAAGCAAGAGGGAGGCAGGTGGTAGACAGACAGACAGCCTGGGACAGACAGACAGTGCCTGAGTTAGACAAACAGAGCCTGGGATAGACAGACAGAGCCTGGGTTAGACAGACCGAGCCCGGTATAGACAGACAGAGCCTGGGATAGACAGACAGAGCCTAGGGCAAACAGACAGAGCCTGGGATAGACAGAGCCTGGAATAGACAGACTGAGACTGGGATAGACAGACTGATCCTGGGATAGACAGACAGACAGAGCCTGGGATAGACAGAGTCTGGGATACACAGACAGAGCCTGGGATAGATAGACAGAGCCTGGGATAGACAGACAGACAGAACCTGGGATAGACAGACGGAGACTGGGATAGACAGACAGACAGATACTGGGGTAGACAGAGCCTGGGATAAGCCCAGACAAACAGAAGTCATCTGTGGAAGACAACACGGCCGAGACCTAGAAGACAGAGTTGAAGGAGCAGCAGGGCATTGACAACAGGGAAGGAGACAGCCTGGACCTGGGTCCAGAGTCTCGCAGGCATGGGCAGGTGCTAGAACTCTGCAGTCGCAGCCTTTCTTTGGGGTCCTCAGACTAACTCTAGGGAGGGTGTGGGGCAGATGCAATTCAGAACCTAGGGGCTACCAAACACACTGCCCTTGCAGGAAGTCCAGAACCACCATCCTGCTGTGTAGCCCCCTGTGGGCATCAGGGAGCTGACTGAAGGCAGAATCTAGGGCTATCATCCAATTTGAATTCAAGAGCTGGACAGTCTGGGACTAGGGTTCCGAGGAGCAGATCCACTTACCTTTGAGACATGCTGTGCTGGGTGAACGGGGGACTAGATGCTCACACGGGGCCTGACTCTCTCCTTCCTCCCCAG
Seq C2 exon
TGCCCCTGCCCCGCCCTCAGACCCTTCAGAAGCTGAAGGTGCCCATCATCGACCCTGAACTCTGCAAAAGTTTGTACTGGCGGGGAGCTGGTCAGGAAGCCATCACCGAGGACATGCTGTGTGCTGGTTACCTGGAAGGGAAGCGGGACGCTTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039698:ENSRNOT00000060888:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCAAGGTCTCAGAAAGT
R:
AGGTAACCAGCACACAGCATG
Band lengths:
351-2014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]