BtaINT0118724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020582 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr25:2182545-2183525:+
Coord C1 exon
chr25:2182545-2182702
Coord A exon
chr25:2182703-2183291
Coord C2 exon
chr25:2183292-2183525
Length
589 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ACCTTCCTTCCTTTCCGCAGGGC
3' ss Score
12.87
Exon sequences
Seq C1 exon
TGCCCCTGTCCCACCCTCAGACCCTCCAGAAGCTGAAGGTCCCCATCATCGACTCAGCCACCTGCAGCCGCCTGTACTGGCGGGGAGCCGGGCAGGGCGCCATCACCGAGGACATGCTGTGTGCTGGCTACCTGGAGGGGGAGCGCGACGCCTGTCTG
Seq A exon
GTGAGCACTTTCCTCCTTCCCGGCCCTGCCCCACTCAGCTCCATCACCCCTCACCTTGCTGGGCCTCCGTCTAGCATCTGCCCTGACCTGGCAGTCCCCCTAGAGAGATGCCTACAGAACCCGGCCCCAGCCTGGCTGAGCCCTTCTTTCCTTTGTTCATACATCAGACATGGTGAGAATGGGGTGTGCCTGACCCCGTTCTCAGGGAGCCGCATCCAAGGAGGGGGTGCTGTGGTCCTGGCACCCCCCAGCGGGCTACAGGGAGGAGGATGGCGGACTGTGGGACCTTGCACACCCGGTCTGAGACACTCTTCTTTCTGAGCCGTGGTTTCCTCATCAGTGAGGCAGATCACAACCCTCGCTCCATGCCTCCAGGGCTGTGAGGGAGAAGGTCTAGCACTAGGTGCTTCTCACCAGGAGTGAGCCTGGGAAGGGGGCCCTCCCTGCCCCGGGGCGCTAGTTAGGGCTTTGCCGGTCCAGGCCCCAGGGTCTGGAGAAATGGCCCGTCTGCCACCTGCTGCGGCGCGAGTGCTGGGCTCTGCCCACCCCTTGGCCCATGCGGACCCCTCACCTTCCTTCCTTTCCGCAG
Seq C2 exon
GGCGATTCCGGAGGCCCCCTGATGTGCCAGGTGGAGGGCACCTGGCTGCTGGCGGGCGTCATCAGCTGGGGCGAGGGCTGTGCGCAGCGCAACCGGCCCGGGGTCTACATCAGTCTGGCCGCCCACCGCTCCTGGGTGCAGAGGATCGTGCAGGGAGTGCAGCTCCGCGGGCGCTCGCAGCGGGGCGGGCCCACAGGCCGCCGGGGCCGGGCCCTGGGGGCGCGGCGCCCTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020582:ENSBTAT00000021967:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCACCCTCAGACCCTC
R:
CACTCCCTGCACGATCCTCT
Band lengths:
310-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]