RnoINT0118692 @ rn6
Intron Retention
Gene
ENSRNOG00000039698 | Prss22
Description
serine protease 22 [Source:RGD Symbol;Acc:1310880]
Coordinates
chr10:13370098-13371258:-
Coord C1 exon
chr10:13371101-13371258
Coord A exon
chr10:13370573-13371100
Coord C2 exon
chr10:13370098-13370572
Length
528 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACTTCCCTTCTTCTCCGCAGGGC
3' ss Score
12.11
Exon sequences
Seq C1 exon
TGCCCCTGCCCCGCCCTCAGACCCTTCAGAAGCTGAAGGTGCCCATCATCGACCCTGAACTCTGCAAAAGTTTGTACTGGCGGGGAGCTGGTCAGGAAGCCATCACCGAGGACATGCTGTGTGCTGGTTACCTGGAAGGGAAGCGGGACGCTTGTCTG
Seq A exon
GTGAGTGCCACCCTTTGTCTGCCCCATTTGGGAAACCACCCACCTCTTTTTATGCCTCCTCTCTCAGAGTCTCCCTGGGACATCCTGTCTCACCTCTCTCTGGCTGGCTCCCCTTTAGCCTGTCTGGACTTTTTCTTGTTTATACATGGGTTGTGTACAGAGCACTTCAACAGTAAAACGTGGGTTGGCAGCTGTTATTCTGGGGAGGGCCCAGTGGTTCAGAACCCTGACCTCAAGGGCTAGTCACATGACTAAATGAGGATGGTAGGATGGTGGTGTAGTTAGCCCTGAGGTGGCCAGCATTTGGCCTGACTGCAGTGCCCATGTTGCCAATGGTGTAAACCTTTTAAACCTGTAAAACAGAAGCAGTCTCATCTCCTGTTGTGGGGAGGCATGCCACTGGAAGTGGTTCTGTTTGGAAAGCCTGTTCTTCTAGGGCCTTCGCAGAACGGTCGGCTCAGTACTGCAGCCTCGGAGGCACACATTGCCTGCAGGTGTGGCTTTCCTGACTTCCCTTCTTCTCCGCAG
Seq C2 exon
GGCGACTCTGGGGGTCCCCTGATGTGCCAGGTGGATGACCACTGGCTACTGACGGGCATAATCAGCTGGGGAGAGGGCTGCGCGGAGCGCAACCGGCCCGGCGTGTACACCAGCCTCCTAGCTCACCGCCCCTGGGTGCAGAGGATCGTGCAAGGGGTGCAGCTGCGAGGGCGCTTGGCGGACAGTGGGGACACAGGGAGCTCTTAAGTTGGGATCTGAAGATGAGCAGCTTCCGGCAATTCTCTCCGCTGTAAATATGTCTTCTACCTCCTGGGGGCGCCCACGGCCTGCGCAGGAGAACAAGGAAGTCCTGGAACCTCCCACAGAGAGTCCCTGCCCCTCAATCAAGGACCATGTTTGTGTGTGTGCCTGGGTTTGTGTGTATAATGATTTGTTTTTGTTTTTGTTTTTTTTTTACAGTTATTTGTAACCATGCCCACATATTTATTCTAGTTTCAATAAATTATTTATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039698:ENSRNOT00000060888:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=65.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTTACCTGGAAGGGAA
R:
GGACTTCCTTGTTCTCCTGCG
Band lengths:
348-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]