MmuINT0127429 @ mm10
Intron Retention
Gene
ENSMUSG00000045027 | Prss22
Description
protease, serine 22 [Source:MGI Symbol;Acc:MGI:1918085]
Coordinates
chr17:23993535-23994756:-
Coord C1 exon
chr17:23994599-23994756
Coord A exon
chr17:23994045-23994598
Coord C2 exon
chr17:23993535-23994044
Length
554 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACTAACCTTCTTCTCTGCAGGGC
3' ss Score
10.03
Exon sequences
Seq C1 exon
TGCCCCTGCCCCACCCTCAGACCCTTCAGAAGCTGAAGGTGCCCATCATCGACTCCGAACTCTGCAAAAGCTTGTACTGGCGGGGAGCCGGTCAGGAAGCCATCACCGAGGGCATGCTGTGTGCTGGTTACCTGGAAGGGGAGCGGGATGCTTGTCTG
Seq A exon
GTGAGTGCCCGTCCTTTGTCTGCCCCATCTGGGAAGCCATCATCTCTCTCTAAGAGTCTCCCCGGGGACATCCTCTCTCACCTCTGGCTAGGTCCCCTTTAGCCTGTCTGGGCTTTTTCTTGTTTATACATGGGGTTCTTGTTTATACATGGGGTTCTTGTTTATACATGGGCTCTGTACAGAGCATTTCAGCAGTAAAACACAGGTTGACAGCTGTCATTCTGAGGAGGGCCCAGTGATTTAGAACCCTGACCTCCAGGGCCAGTCCCATGACTGAATGAAGATGGTAGGATGGTGGAGCAGTTAGCCCTGAGGTGGCCAGCATACCGCCTGGCTGTAGGGCCCATGTTGCCAATGGACTTTCTAAACCTGCAAAACAGAAGCGGTGTCATCTCCTGCTCCTTGTGGTTGTGGGGAGGGCTCGCCACCAGAAGTGGTTCTATTTGGAAAGCCTGTCCTTCTAGGGCCTCACAGAATGGTTGTCTCAGTACTGCTGCATCCAAGGACACATTGCCTGTAGGTGTGGCTTTCCTGACTAACCTTCTTCTCTGCAG
Seq C2 exon
GGCGACTCTGGGGGTCCCCTGATGTGCCAGGTGGATGACCACTGGCTACTGACTGGCATAATCAGCTGGGGAGAGGGCTGCGCGGAGCGCAACCGGCCCGGTGTGTACACCAGCCTCCTAGCTCACCGCTCCTGGGTGCAAAGGATCGTTCAAGGGGTGCAGCTGCGCGGGTACTTGGCGGACAGTGGGGACACAGGAAGCTCCTAATCTAGGATCTGAAGATGAGCAGCCTCCTGCAATTCTCTCTGCTGTAAATATGTCTTCTACCTCCGGGGGGCGCCCGCGGCCTGAGCGAGAGAACAAGGAAGTTCTGGAACCGCCCACATAGAGGATCCGCCCCTCAATCGAGGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTCTGTGTGCGTGTGTATGCGCGCGCACGTGCGCGCGAGAGCAATGATTTTTTTTTTTACAGTTATACGTAACCATGCCCACATATTTATTCCAGTTTCAATAAATTATTTATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045027:ENSMUST00000041649:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=65.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAAAGCTTGTACTGGCG
R:
GCAGAGAGAATTGCAGGAGGC
Band lengths:
346-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types