HsaINT0132956 @ hg19
Intron Retention
Gene
ENSG00000005001 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:14368]
Coordinates
chr16:2902728-2904023:-
Coord C1 exon
chr16:2903866-2904023
Coord A exon
chr16:2903331-2903865
Coord C2 exon
chr16:2902728-2903330
Length
535 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ACCTCGCCTCCTCTCTGCAGGGC
3' ss Score
11.52
Exon sequences
Seq C1 exon
TTCCCTTGCCCCACCCTCAGACCCTGCAGAAGCTGAAGGTTCCTATCATCGACTCGGAAGTCTGCAGCCATCTGTACTGGCGGGGAGCAGGACAGGGACCCATCACTGAGGACATGCTGTGTGCCGGCTACTTGGAGGGGGAGCGGGATGCTTGTCTG
Seq A exon
GTGAGCTCCCTCGAGCCCCCCACCCCTGGCCAGGAGGGCCTCGGGAAGGAGCCAGCGTCAGTCCTGTCCCCACTGAGCCCCACAACCTCTCCCTGGCCTCCTCCCCAGAACTGGCTGTGCCTGACAGTCCCGGGTCCCCATAGAACCAGCCTCAGCCTGGCTCAGCCACTCACTTATTTGTTCAGACATTAAACTGGGCATCCCAGCTGCACCACCTCGCCCTCCGCGAGCTTTCATTTCCTTCAGGGGGCTTCCCACGCCTCAGTGCCCAGAGCCAGCTGTAGCTCAGGGGCTGTCTGGAAGACGGTCAGATGGTGCAGCGGCAGCACCCGCGCCTGGACGTCTTAAGGCCTGGCTGCAGCTCCTACTCTGCCGCCGGGGACTTCTCACCTGGGTGGAGCTCAGGTCCTGTCTCCTCCAGGAAGGAGAAACGGGCTCCCGGGAAGGGGCTCATCTGCCCCCTGACAGGGCACGGGCCCTGGATTCTGCCACCCCCTGTGCCACGGGGGTTCCTAACCTCGCCTCCTCTCTGCAG
Seq C2 exon
GGCGACTCCGGGGGCCCCCTCATGTGCCAGGTGGACGGCGCCTGGCTGCTGGCCGGCATCATCAGCTGGGGCGAGGGCTGTGCCGAGCGCAACAGGCCCGGGGTCTACATCAGCCTCTCTGCGCACCGCTCCTGGGTGGAGAAGATCGTGCAAGGGGTGCAGCTCCGCGGGCGCGCTCAGGGGGGTGGGGCCCTCAGGGCACCGAGCCAGGGCTCTGGGGCCGCCGCGCGCTCCTAGGGCGCAGCGGGACGCGGGGCTCGGATCTGAAAGGCGGCCAGATCCACATCTGGATCTGGATCTGCGGCGGCCTCGGGCGGTTTCCCCCGCCGTAAATAGGCTCATCTACCTCTACCTCTGGGGGCCCGGACGGCTGCTGCGGAAAGGAAACCCCCTCCCCGACCCGCCCGACGGCCTCAGGCCCCGCCTCCAAGGCATCAGGCCCCGCCCAACGGCCTCATGTCCCCGCCCCCACGACTTCCGGCCCCGCCCCGGGCCCCAGCGCTTTTGTGTATATAAATGTTAATGATTTTTATAGGTATTTGTAACCCTGCCCACATATCTTATTTATTCCTCCAATTTCAATAAATTATTTATTCTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001-PRSS22:NM_022119:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=57.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCATCACTGAGGACATGCT
R:
GGATCTGGCCGCCTTTCAGAT
Band lengths:
343-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)