BtaINT0118785 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005019 | PRSS50
Description
protease, serine, 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr22:53341509-53343148:+
Coord C1 exon
chr22:53341509-53341792
Coord A exon
chr22:53341793-53342981
Coord C2 exon
chr22:53342982-53343148
Length
1189 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GGGGGGCCCCTGTCCCACAGGTC
3' ss Score
8.46
Exon sequences
Seq C1 exon
GAGTGACGTTACCTATTCAGTACGGGCGGGGAGTCCGTGGATTGACCGGATAACGAAGACTTCCATCGACATCCTGGCAAAAGAGGTCATCGTGCACAGCCGTTATCGAGCCAGTCGGTACTGGTCCTGGGTTGGCCGGGCCAACGACATTGCCCTCCTCAACCTGGATCGGCCAATGCAGTACAGCAAGTATGTCTGGCCCATCTGCCTGCCTGGCTTGGACTATTCGGTGAAGGACTACTCGCTCTGCACTGTGACAGGCTGGGGACTCCCCAGGGTTGATG
Seq A exon
GTGAGTTGGAACCTTCCTACCCCCAGCAGGGTGGATGGTGCGGGATAGAACCTGGGTGCAGGCCAGGGTCTACCGTGGACAGGCATTTCTGAGACGCCTTCCCCAGGGAGCCCACCACCCCTCTCCTGTCAGACTCTTATCTCTTTTTCCCTTTGAGGGTTTCAGCAGTGAATGTATCTAGGGGACCCAGATTGCCCTCGAAACCCTCAGGCCCAGGTCAGGGTATGTAAACAGGCCATCCTTGAAGGCATAGTGGGCACAGAGTGATATCTTGCTATCTGCACACAATCCTACGGCATCATGTTTTGAAGCAGAACAGGCAAGGCGAGAGGACAAGGGGTCTGTGTCTGTAATAGGGTCCCCAGAAGACCCATGCATCTGGCTAAGGGCAGTCTGCACCCGGAAGCTGGGAGTCACCGAGGGTTCCCCATGTCTCCCCCTACCCCAGCAGTGGCCCTCAATCCCTTATCATCCCAGTTTAGGAGCCCAATGAGCAGGAGTGTTGTCCCAGGGCCATCCAAGGGCCCCTTTCCTTAGCCCAGAAATGTCCATCCTCTTCAGGGAACCCCTGTCCCTTTCCCACAAGAGAAGTGTTCTTCCCTGTGGTCTCATAGAGCCAGCATGCCTGAAAGCACCCAGGATCTCCAGCCCAGGTGGGGTGGCTTTTTGTCATCCCTGCCATGGCCTGTCTGGTGAATAGTTGGGAACGGTTGGAAGTCACCTGTCCCCCGGAAGCTCAGACTTAGGGACAGACACACACTTGTGAGACTGGGGAGGGGAGTGAGGAGTTCCTGGAACCACAGAGGCGAGTCTGGGGGAGCTCAGGGGAGGAAGAGGCCTTTGAGGAAAGCTTGAAGAAAAGGCAGGATTTGGACCTCAGATAGACTTGGTAGGATTCGGGGATAGATGGAATGCAAAAGTCAAAATGCCGAGATCAGAATGGACTTGATGGATTGGACTCTGCCAGATGTGAGATCAGGCCCAGCAAAGCCATATTTTGGGTAAACTGCTCCAGGGTCTCTATACTGAGGGGCTTTTGGGAAGCGTCTGGAGTGGTAGGTGGGCTAATCCTGGAGAGATCTCCAGGGCTGCTGTGTGGCAAGGAACAAAGGGAGGATGGGCATGAGGCCAGTGGCTGTGGGCACGAGCTAAACAGCCAAGCCTGAATGGGGGGGCCCCTGTCCCACAG
Seq C2 exon
GTCAGTGGCCCCAATTTCGAACCATCCAGGAGAAGGAAGTCACCATCCTGAACAGCACAGAGTGTGACAGCCTCTACCGCAGGTTCTCCAAAATCCCCTCTCTGATTCAGATCATCAACTCCCAGATGATTTGTGCAAAGGACGTCGACAGGGAAAAATTCTGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005019:ENSBTAT00000055134:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGTGCACAGCCGTTATC
R:
TGTCGACGTCCTTTGCACAAA
Band lengths:
348-1537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]