MmuINT0127534 @ mm9
Intron Retention
Gene
ENSMUSG00000048752 | Prss50
Description
protease, serine, 50 [Source:MGI Symbol;Acc:MGI:2447303]
Coordinates
chr9:110764766-110766400:+
Coord C1 exon
chr9:110764766-110765049
Coord A exon
chr9:110765050-110766233
Coord C2 exon
chr9:110766234-110766400
Length
1184 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ACTGGGGACCTGTCCCACAGGCA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GAACCATGTTAACTACATAGTGAGGGCGGGGAGCCCGTGGATTAATCAGACGGCAGGAACCAGCTCAGATGTGCCGGTCCATCGAGTCATCATAAACCATGGCTACCAACCCAGACGGTACTGGTCATGGGTTGGCCGGGCCCATGACATCGGCCTTCTCAAGCTCAAGTGGGGGCTCAAGTACAGTAAATACGTGTGGCCCATCTGCCTGCCTGGCCTGGATTACGTGGTGGAGGACAGTTCTCTCTGCACTGTGACAGGCTGGGGATATCCCAGGGCTAACG
Seq A exon
GTGAGTCAGAGTCCCCAACCCCCATCCTAGGGTGCATGGGTGGGAGAGAGGACTTGGGTGTGGCTGGGGTGCCCCATGGACGAACATTTCTGGGGTGCCTTTTTTTAAGGAGCTGACCTATCCAAGAACTTTCTTTTTGGCGTCTCATCTCTCAAGTCTCCTGCCTCTTGGGGTGTCTTGTCAGTGAACATAAAACAGTCAGGCCTCTCAGAGTCACGACTGCTGACGTAAACAGAACTTTCTTTTTTCTTTAAAGATTTTTTAAAATTTTATTATTATATCTAAGTACACTGTATTTCAGACACACCCCAAAGAGGGCATCAGTTGTGAGCCACAGTGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGAGTGGACCTTGTGAGACTCTCAGCTTTTCAGACACAAAAAACATCTTTTCTGGGAAGCATCTAGCAATCCCGAGAACCAGTCTCTTGTACTCTCTACCTACCGATACCCTATGGTTGTGTGCGGGTGACAAGCTCTCATTCTGAGACCTCCCTACTCTCAAGAAAGTTCTGTTTAGGGCTGGAGAAATGGCTCAGGGGTTAAGAGCTGAGAGTCTCACAAGGTCCACTCACATCCTCCTTCCCTCCAATGCCCTGCCCCGCATCCCTTGTCATTCCATTGTAGGAGCCAGGCTCTCATACCCGGCCACAGGATTGTTTTTCTGATGGGTTCTGGGACTATCCACTCCCTTTATGGAGTCAATGCACAAGAGACATGCCCTTCTCTGTATCCTTAGGGATCCGATTCCCCCCCTCCCCCCAAACAGCCATGCTGTGGCCTATCTGGGAATAATCGGAAGTTTCCTGACTCCCAGGAGTTCAGGCACCTTTTGGGTGGGATGGAAGATAGTGGTGATGTGGGGGTGAGATAGGGGATCCGGGTAGGGTTGTGGGGTCAGTCTGGGGAAGCTTAGTGAGAAAGAGGCCCCAGGGTTTTGGCCCTGAGAATCCTGGCAGGCGATTGGAAGAGGACTAGCAGAGCCAAGAGGCCAGTAGGTGTGGACTATGTTCCAGCACCTACTTGGGACCTGCTGGCCAGAGGGAAAATAGTCCAGATATATGGCCGCTATGCAAAGGAGACAGAGCCGGTGTCTGTGGGTCACAGTTAGTGGCTAATCCTGACTGGGGACCTGTCCCACAG
Seq C2 exon
GCATCTGGCCCCAGTTCCAGTCCCTCCAGGAGAAGGAAGTCTCTATCCTGAACAGCAAGAAATGTGATCATTTCTACCACAAGTTCTCCAGAATCTCCTCTCTGGTTCGGATCATCAACCCTCAGATGATCTGTGCCTCGGACAACAACAGGGAGGAGTTCTGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048752-Prss50:NM_146227:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATGGCTACCAACCCAGA
R:
AGCAGAACTCCTCCCTGTTGT
Band lengths:
355-1539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: