BtaINT0118787 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27454363-27455369:-
Coord C1 exon
chr25:27455312-27455369
Coord A exon
chr25:27454384-27455311
Coord C2 exon
chr25:27454363-27454383
Length
928 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTGCGTCTCTCTCTTCCCAGGTC
3' ss Score
12.72
Exon sequences
Seq C1 exon
ATGAAGCAGAGCTGGAGACTGAAGCTGTTCATCCTGGGAGCCGTGGTCCTCACAGAGG
Seq A exon
GTGAGTCACCCGGGTTTGGGTCGGGGGGTGATGGTTTGGGGGCTGTCCTCTGCTGGAGCAGCCCCTGAAGCTGGGTGTGTGGGAGGGAGCCTGCCTGGGGGGGTGACAGTCAGCCTGTGGCAAGGTAACTGTGTCCGTGTGTGTTGGGGGGGGGAGGTGTATGTGGCCGCCTGTGTCCAAACGGGTGTGATTTCCTTGGCCTGGATTATAATCTGTGTCTGCAGGAACTGTCATTATGCCTGTGTGTGTACCCTGTGCCCTCATTGGCCTCTCTCCTTCCACAATGGCTTTAGGCAAGTTCTGGGGCCCTTTGGTCCCAGTCTCCCCTTCTTTACGTACGTCCCATCTCTCCCATGTTCAATGGGTATGTTTGTGTGTGCCTGTGATGGGAAAGACGCAGGGCAGGGAACCCTTTGATAGAGTCTCTTTCTAAAAAGATGGGGGAGGCCGAGTCGTCAGAAGAGGGGTGGGGTGAGTCTCAACTCTTGATGCCCTCCCCAACTTGGACATGACGCAGGCCTTCCTCTTAGGCCTCCACAGCCCAGGGCACAATTAAGCTAATGCTCTCCACAGGCACAGGCTGCTCCCTGACTCAGCGGTGGGGGCAGGAGTTGGGGGTTCTGAAGCCTGGAGGAAGGTTGGCCTGGTCCCAAGCTGAACCCCAGGTCCTGCCACTCAATGCCCAGGAGTGCTGAGCACAGCTGAGAGAGGAGAATTAATGACTGAGTGTACACTCTGAATAGCTTCCAATAAAAGCTGTTTTTTGACCTCATATAAATATTTTCATTCTGGGAGGGGCCGGTGAAGTAGCCACAGACAGAGTCATAGCAAGGACCCAGGCCAGTCCCCCCCCAAACCTGTCCCCTCCACCAAGTCTGGGCTGGGCAGGTCCCCTCTCCAAGGCTCACCTGCGTCTCTCTCTTCCCAG
Seq C2 exon
GTCTTCAAGCAGCTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]