HsaINT0133022 @ hg19
Intron Retention
Gene
ENSG00000151006 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:34407]
Coordinates
chr16:31099127-31100130:-
Coord C1 exon
chr16:31100073-31100130
Coord A exon
chr16:31099148-31100072
Coord C2 exon
chr16:31099127-31099147
Length
925 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTGTGTCTCTCTCTTCCCAGGTC
3' ss Score
13.25
Exon sequences
Seq C1 exon
ATGAAGTGGTGCTGGGGCCCAGTGCTGCTCATCGCGGGTGCCACAGTCCTCATGGAGG
Seq A exon
GTAAGCCGCCATGTGCTGGGGTATGGGTGTGGCCTGGTGGGGGCTCAGGGGCCATCTCTGCCCCAGCAGTCCCTGCTTCTTGGTGGGGGGACCGCCTGTGGGCGACAGTCCACCAGTGGGGATGTAACTCCGTAGGACTCTGTGGGGTGGTATATGTGGCCACCTGTGTCAACATGGATGAGATTTTCTCGGGCCAGCTGCAGTTTGCGTTGGCGGGGCCTGTGGTCTTGTGTGTGTGTGAGGTGCTGCCTGCGTGTGTCCTGTGCCTGCCTCCCCCTCGACTTCCACAATGACGTCAGGCAAACTCTGGGCTCCTCTGGCCTCAGTTTCCCTTTCTTTTCATCCATCCTCTGGGCAGCCTGGCTCAGCTGTCTCATGGGGTGCCTGTGTGCCTGTGAGGGGCGGTGGGCAGGGGCCCTCTCTCTGGCGGGCTCTCAGACAGTTTCTGGGAAGGTGGGGAAGACTGAGTCTCTAGACCAGGGTGAGGTAAGTCTCCATTTCTTGGGGCCCTCCCCACTTGGAAATGATGCAGGCCTCTAATCCTTCCTCTTAGGCCTCTGCTGCTAAGAGGACAATTAAGCTAATGCTCTCTACACACACAGGCCGCCTGGCTGACTCAGTGGCGGGGGCAGGAGTTGGGGGTTCTGAAGCCTGGAGGAGGGCTGGCCTACTCCCAAGCTGAACCCCAAGCCCCAGAGTGCTGAGCACAGCTGAAGGAGAATTAATTACTGAGTGTGCACACTGAATAGGTTCCAATAAAAGCTGTCTCGGCCTCATATAAATATTTTCATTCTGGGAGGGGCTGGTAAGGTAATCAGAGTCACAGGCAAGGACCCTGGGCCCGCCCCCCAGCCCATCCCCTCTCCTCCCCAAAGCTAGGCAGGCCTGGAGTCCCTGCATCTTACCTGTGTCTCTCTCTTCCCAG
Seq C2 exon
GTCTTCAAGCCGCTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151006-PRSS53:NM_001039503:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)