RnoINT0118797 @ rn6
Intron Retention
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199335119-199336451:-
Coord C1 exon
chr1:199336234-199336451
Coord A exon
chr1:199335140-199336233
Coord C2 exon
chr1:199335119-199335139
Length
1094 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTTGTGTTTTTTCTTCCTAGGTC
3' ss Score
11.76
Exon sequences
Seq C1 exon
GCCACACAACCACAGCCCCCAAGCTAAGAGATGTTGGCTCCCTTCCAGCCTAGGAAAAGTAACACCTGACTCTTAACCAACTGGGGGCGGAGCAGGGGTGGAGCCAGGGAGACCCAGGTGCCCTTCCTGAGAGCCTGAGCACTGAGTGGCCTGGAGCAGCATGAGGCAGAGCTGGGGACCAGAGCTGCTTATTGTGGGAGCTGTGATCGTGATAGAGG
Seq A exon
GTAAGTCACTCAAGTGTGAGGGAGGGGGAGTGGCACTGTGGGGGCTCCTAAGCCTTCATCTGCCCCAGTAGCCTGTATTTTGGTATGTAAGGGATCCTGAGGGGGCTACAGTCTCTCTGTGGATGCCCTTGGTGTGTGTCTTTTGGGGAGGAGGTTGTTCTTGGGGGTGAGGTGCTGAGGGGAGGTAACACAGCCTGTTGTCAAAATGGCTGTGATTTTCCTAGGCCAAATTACAGCATTTTGGAAGAACTTGTTAATACACTTAATTCTTTACGGTAGCTCTCTGAGTTTAAGTACTGCCGTTGTTCTATCTTGGTGAGGAAACTGAAGTACAGAAAAGCTAATGTTCTTGAGGCCACAGTCTAACGCCAAGGTTAGAAAGGGAAGGATCTGAGATCTCTGTCTGAACGTGTATGTTGCGTGTGCGTGCTCCCCCCCCCCCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTTGCCCCCTCTCTTATCCTCTACTTCCAAAATGACCTTAGGCATGTTCTGGCCTCACTGCCTAGAGGCTGTCCACACCAACCCTGCCTCTGATGTACACAGTAGGCCTGTTTAAGTGAGGCTCTGATGGGCTGTAGGCATGACCAGGACCCATTGGAAAGGTAGACAGTTTGATTCATTAGGACGGGGTGGAGTGAGACTCACTTGGGGCCTCCCCCACTTAGGACATGACACAGACCTCTAATCTACCTTCTCAGGCTTCCACAGCTGAAGGGACAATTAAGCTAATGCTCTTCACATACACAGGCCACCTCTCTGACTCAGTGGAAAGGGCAGGAGTTAGGGGTTCAGAAGCCTGGAGGAGGGTTGGCCTACTCCCAAGGTAAACCTCAGGCCTTGCTCCTTGGGCCCAGGAGTGCTGAGCACAGCTGAGAGAATTAATGGCTGTGTACTCTGAATGAGCTCCAATAAAAGCTGCTTTTCCGCCTCATATAAATGTCTTCATTCTGGGAGGGGCTGGTGAGGTAGCCAGTCATAGATAAGGACCCAGGACCTGTCCTTCAGCTCATCCCCTCCACCCAATTTGGGCTAGGCACCCCTACATCTTGTGTTTTTTCTTCCTAG
Seq C2 exon
GTCTTCAAGCAGCTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040:ENSRNOT00000035672:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACAACCACAGCCCC
R:
CACGCTGAGCTGCTTGAAGA
Band lengths:
238-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]