MmuINT0127544 @ mm9
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135033251-135034484:-
Coord C1 exon
chr7:135034373-135034484
Coord A exon
chr7:135033272-135034372
Coord C2 exon
chr7:135033251-135033271
Length
1101 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTGTGTTTCTTTCTTCCTAGGTC
3' ss Score
12.11
Exon sequences
Seq C1 exon
GGGAGACCCAGGTGGCCTTTCTGACAGCCGGAGCACTGAGTGGCCTGGAGCAGCATGAGGCAGAGCTGGAGACCAGAGCTGCTTATTGTGGGAGCTGTGGTCGTGATAGAGG
Seq A exon
GTAAGTCCTTCAAGTATGAGGGACAGGGAGTGGCATTGTGTGTGTGTGTGGTGGTGGGGAGGCTCCTAAGCCTTCATCTGCCCCAGTAGACTGCAATTTGGTATGTAAGAGATCCTGAGGGGGCTACAGTCTCCCTGTGAATGTCCTTGGTGTGTGTCTTTTGGGGAGGGAGGTGTTCTTGGGGGTGAGGTGCTGAGGGGAGGTAACACAGAGCCTATTGTCAAAATGGCTGTGATTTTCCTGGGCCACGTTACAGCACTTTGGAAGAAGCTGTTAATATATTTAATCTTTACAGTAGTTCTTTAACTTGTGCTACTGTTCGATCTTGGTGAAGAAACAGAAGTACAGAAAAGCTAAATAATGTCCTTGAGACTACAGTCTAATGCCAGGGTTAGAAAGGGTCTGAGATCACTGTCTGAACGTGGATGGTGGATGTTGGGGGGGGGGGGTGTCTGTGTGTGCGTCTTGGTCTTGCCCTCTCTCTTATCCTCTACTTCCAGAAGGACCTCAGGCATGTTCTGGCCTCACTCACTGGAGGCTGTCCACACCAGCTCTGCCTCCGATGTACAGTAGACCTATTTGAGTGAGGCTGTGATGGGTTACAGGCATGACAGGGACCCACTGGAAAAGTAGACAGTTTGATTCATTAGGATGGGGTGGAGTGAGACTCACTTGGGGCCTCCCCCACTTAGGACATGACACAGACCTCTAATCTACCTTCTTAGGCTTCCACAGCTGAAGGGACAATTAGGCTAATGTTCTTCACATACACAGGCCACCTCTCTGACTCAGCGGTAAAGGCAGGAGTTAGGGGTTCGGAAGCCTGGAGGAGGGTTGGCCTACTCCCAAGGTAAACCCGAGGCCTTGTTCCTTGGGCCCAGGAGTGCTGAGCACAGCTGAGAGAATTAATGGCTGTGTACTCTGAATGAGCTCCAATAAAAGCTGCTTTTCCGCCTCATATAAATGTCTTCATTCTGGGAGGGGCTGGTGAGGTAGCCAGTCACAGATATGGACCCAGGGCCTGTCCTTCAATCCATCCCTCCACCCAACCTGGGCCAGGCAGTTACGGCACCCCCACAGCCTGTGTTTCTTTCTTCCTAG
Seq C2 exon
GTCTTCAAGCAGCTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: