BtaINT0118794 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27451582-27452061:-
Coord C1 exon
chr25:27451911-27452061
Coord A exon
chr25:27451827-27451910
Coord C2 exon
chr25:27451582-27451826
Length
84 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCAATGCCGTCCTTGCACAGGCG
3' ss Score
7.37
Exon sequences
Seq C1 exon
CCTGTGGATCTCTGAGGAGAGAAGGCCCTCAGGCAGGAGCACCCTCCCCGTGGCCCTGGGACGCCAGGCTGAAGCACCAAGGGAAGCTGGCTTGCGGCGGAGCCCTGGTGTCAGAGGAGGTGGTGCTGACTGCTGCCCATTGCTTCATTGG
Seq A exon
GTGAGCCCCGACTCCCTCGCCCTTGTGCCCCAACTTCTGATGGTGGCCCTGCCACCCAGTGCTGTCAATGCCGTCCTTGCACAG
Seq C2 exon
GCGCCAGACCCCAGAGGAATGGACAGTAGGCCTGGGGGTCGGACCAGAGGAGTCGGGCCTGAAGCAAGTCATCCTGCATGGGGCATATACTCACCCGGAGGGGGGCTATGACGTGGCCCTCCTGCTGTTGGCCCAGCCTGTAACCCTGGGCCCCAGCCTACGGCCCCTCTGCCTGCCCTACTCGGACCACCGTCTGCCTGATGGGGAACGTGGCTGGGTCCTGGGGCTGGCCCGCCAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=84.3)
A:
NA
C2:
PF0008921=Trypsin=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGAGAAGGCCCTCAG
R:
ACTGTCCATTCCTCTGGGGTC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]