RnoINT0118803 @ rn6
Intron Retention
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199332422-199332895:-
Coord C1 exon
chr1:199332745-199332895
Coord A exon
chr1:199332664-199332744
Coord C2 exon
chr1:199332422-199332663
Length
81 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
AACCCTGCCTCTCAACACAGGCG
3' ss Score
7.35
Exon sequences
Seq C1 exon
CATGTGGCTCCTTGAGTAGTGGAGGACCCCAGGCAGGAGCCCTCTCCCAGTGGCCCTGGGATGCCAGACTGAAGCACCATGGGAAGCTGGCTTGTGGTGGAGCCCTGGTATCGGAGGTGGTGGTGCTGACTGCTGCTCACTGCTTTATCGG
Seq A exon
GTAAGCCTTAGGTCTCTTTTCCTTTGTGCCCTTTGTCTTAGCTCTGTCACTCAGTGCTGTCAACCCTGCCTCTCAACACAG
Seq C2 exon
GCGACAAACCCTAGAGGAATGGAGTGTAGGACTGGGGGCTGGACCAGAGGAATGGGGCCTGAAGCAACTCATTCTGCATGGGGCTTACACCCACCCAGAAGGCGGCCATGATGTGGCTTTCCTGCTGCTGGCTCAGCCTGTGACGTTGGGCCCTGGCCTCAGGCCCCTCTGCTTGCCCTATGCTGACCACCGCCTGCCTGACGGGGAACATGGCTGGGTTCTTGGGCTGACCCGAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040:ENSRNOT00000035672:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(24.4=84.3)
A:
NA
C2:
PF0008921=Trypsin=FE(46.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGACTGAAGCACCATG
R:
CCCCATGCAGAATGAGTTGCT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]