Special

MmuINT0127551 @ mm9

Intron Retention

Gene
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135030691-135031163:-
Coord C1 exon
chr7:135031013-135031163
Coord A exon
chr7:135030933-135031012
Coord C2 exon
chr7:135030691-135030932
Length
80 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
AACCCTGCCTCTCAACACAGGCG
3' ss Score
7.35
Exon sequences
Seq C1 exon
CATGTGGCTCCTTGAGGAGTGCAGGACCCCAGGCAGGAGCGCTCTCTCAGTGGCCCTGGGATGCCAGGCTGAAGCACCACGGGAAGCTGGCTTGTGGTGGAGCTCTGGTATCGGAGGTGGTGGTGCTGACGGCTGCTCACTGCTTTATCGG
Seq A exon
GTGAGCCTTATGTCTCTCTCCTTTGTGCCCCTTGTCTCAGCTCTATCACTCAGTGCTGCCAACCCTGCCTCTCAACACAG
Seq C2 exon
GCGCCAAACCCTAGAGGAATGGAGCGTAGGACTGGGGGCTGGACCAGAGGAATGGGGCCTGAAGCAACTCATTCTGCACGGGGCCTACACCCACCCAGAAGGCGGCTATGATGTGGCCTTCCTGCTGCTGGCTCAGCCTGTGACATTGGGCCCTGGCCTAAGGCCCCTCTGCTTGCCCTATGCTGACCACCACCTGCCTGATGGTGAACATGGCTGGGTTCTTGGGCTGACCCAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=PU(19.6=84.3)
A:
NA
C2:
PF0008921=Trypsin=FE(37.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGGAGCTCTGGTATCG
R:
CACATCATAGCCGCCTTCTGG
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development