BtaINT0120934 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19352014-19352261:-
Coord C1 exon
chr26:19352168-19352261
Coord A exon
chr26:19352088-19352167
Coord C2 exon
chr26:19352014-19352087
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCATCCAATTCATCTTCAGGGT
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCGGCATACCTGCAGAGATTTGGAGTGAACACGGCGGTCTTCGAGAGACGCCACGTGATCGGGGGTGCGGCTGTCACAGAGGAGATAGTCCCAG
Seq A exon
GTGAGCCAAAAAGGTGGGTGAGGGGCATGGGGGTGACCACTGGTGATCCCTGTGACTGTCTTCATCCAATTCATCTTCAG
Seq C2 exon
GGTTTAAGTTCTCCCGAGCATCCTACCTCCTCAGCCTGCTACGACCGCAGATTTACTCCGAATTGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313:ENSBTAT00000032952:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(47.7=100)
A:
NA
C2:
PF134501=NAD_binding_8=PD(33.8=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGAGATTTGGAGTGA
R:
GGAGTAAATCTGCGGTCGTAGC
Band lengths:
146-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]