GgaINT0044275 @ galGal4
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21795294-21795533:+
Coord C1 exon
chr6:21795294-21795387
Coord A exon
chr6:21795388-21795459
Coord C2 exon
chr6:21795460-21795533
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CACCACCCCGTGTTCTCCAGGCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
GCTGCCTATCTGCAGCAGGCAGGGCTGCGCACGGCTGTGCTGGAGAAACGCCATGTGCTGGGTGGCGCGGCTGTTACTGAGGAGATTGTGCCAG
Seq A exon
GTACCCTACATACCCCACGTCCTCCTGCCCGCTACCTACTCTGTGCATCCCTCACCACCCCGTGTTCTCCAG
Seq C2 exon
GCTTTAGGTTCTCCAGGGCTTCCTACCTGCTCAGCCTGCTGCGCCCGCAGATCTACACAGAGCTGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(48.4=100)
A:
NA
C2:
PF134501=NAD_binding_8=PD(32.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTATCTGCAGCAGGC
R:
TCCAGCTCTGTGTAGATCTGC
Band lengths:
159-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]