RnoINT0121133 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261981400-261981645:-
Coord C1 exon
chr1:261981552-261981645
Coord A exon
chr1:261981474-261981551
Coord C2 exon
chr1:261981400-261981473
Length
78 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCTTCTGCTTTGGTTCCAGGAT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GCAGCGTACCTCCAGAGACTAGGGGTGAACACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCTG
Seq A exon
GTGAGTCCTGAGAAGGGTGTGGGGAGAGGCAGGTGTGATGGGGGGGGGGGGTGACTGGTTCTTCTGCTTTGGTTCCAG
Seq C2 exon
GATTCAAGTTCTCCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGACCTGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(48.4=100)
A:
NA
C2:
PF134501=NAD_binding_8=PD(32.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGTACCTCCAGAGACTA
R:
CTTCAGCTCCAGGTCTGTGTA
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]