HsaINT0135646 @ hg19
Intron Retention
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100167339-100167754:-
Coord C1 exon
chr10:100167661-100167754
Coord A exon
chr10:100167413-100167660
Coord C2 exon
chr10:100167339-100167412
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCATCGGATTCGGTTTCAGGGT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCAGCGTACCTGCAGAGACTGGGGGTGAACACCGCCGTCTTCGAGAGGCGCCATGTGATCGGGGGTGCAGCTGTCACTGAGGAGATCATCCCAG
Seq A exon
GTGAGCTCTGATGTGGCATGGGGGAGTGGAGGGCAGTGACTCAGGGTGACAGTCTCCATCCCTGCTGACCCCGGGTGACGGTCTCCATCCCTGCTGACCCCGGGTGACGGTCTCCATCCCTGCTGACCCCGGGTGACGGTCTCCATCCCTGCTGACCCCTGGTGACGGTCTCCATCCCTGCTGACCCCTGGTGACGGTCCTCATCCCTGGTGACCCCTGGTGACAGTCTTCATCGGATTCGGTTTCAG
Seq C2 exon
GGTTTAAGTTCTCCCGCGCGTCCTACCTGCTCAGCCTGCTGAGGCCGCAGATTTACACTGATCTGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-PYROXD2:NM_032709:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(48.4=100)
A:
NA
C2:
PF134501=NAD_binding_8=PD(32.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGTACCTGCAGAGACTG
R:
CTTCAGCTCCAGATCAGTGTAA
Band lengths:
167-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)