BtaINT0120946 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51488548-51488840:+
Coord C1 exon
chr22:51488548-51488647
Coord A exon
chr22:51488648-51488761
Coord C2 exon
chr22:51488762-51488840
Length
114 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
ACTGTCCCATTGTCCCCCAGGTT
3' ss Score
11.43
Exon sequences
Seq C1 exon
GCCAACAATGGGATCTGTTTCCTGCGCTTTGATGACACCAACCCTGAGAAAGAGGAAGCAAAGTTCTTCACTGCCATATACGACATGGTGGCCTGGCTGG
Seq A exon
GTATGGGCTGGGGAGGGCCTGGGCCAAACTGATTATCCATGGGCCTCTCACTGGGCCACAGCTTGCCATTGGGTGCTCCTGCCTGGTTGCTAATACTGTCCCATTGTCCCCCAG
Seq C2 exon
GTTACACCCCTTACAAGGTGACATATGCCTCCGATTATTTTGACCAGCTGTATGCCTGGGCTGTGGAGCTTATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928:ENSBTAT00000025191:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(11.0=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAATGGGATCTGTTTCCTG
R:
CTGCGGATAAGCTCCACAGC
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]