Special

HsaINT0135699 @ hg38

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49100380-49100674:-
Coord C1 exon
chr3:49100575-49100674
Coord A exon
chr3:49100459-49100574
Coord C2 exon
chr3:49100380-49100458
Length
116 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TTTGTTTCATTTTGCCCCAGGCT
3' ss Score
8.4
Exon sequences
Seq C1 exon
GCCAACAATGGCATCTGTTTTCTGCGTTTTGATGACACCAACCCTGAGAAGGAGGAAGCAAAGTTCTTCACGGCCATCTGTGACATGGTAGCCTGGCTAG
Seq A exon
GTATGGACTAGGCAAAGCCTAGAAGGGCTGGTGGTTAGTGGGCCTCTCCTTGGGCCATGGCCTGCCCACTGGGTGTTTGTGGCTGGCTGCTCATACTTTGTTTCATTTTGCCCCAG
Seq C2 exon
GCTACACACCTTACAAAGTCACATATGCGTCTGACTATTTTGACCAGCTATATGCGTGGGCTGTGGAGCTCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0074916=tRNA-synt_1c=FE(11.0=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=PU(6.7=92.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAATGGCATCTGTTTTCTGC
R:
CTGCGGATGAGCTCCACAG
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development