RnoINT0121181 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117302183-117302478:+
Coord C1 exon
chr8:117302183-117302282
Coord A exon
chr8:117302283-117302399
Coord C2 exon
chr8:117302400-117302478
Length
117 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
CTGTGTCTCTATCACTCCAGGTT
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCCAACAACGGTATTTGTTTTCTGCGTTTTGATGACACCAACCCTGAGAAGGAAGAAGCGAAATTCTTTACTGCTATTTATGACATGGTGACCTGGCTGG
Seq A exon
GTATGGCTGGGTTGAGGCCTGGGCAGAGGCGGTCGGGAGTGGATCTCTTTTGTGGGCCATGGCTTTGCCAGGCAGTGTTTCTTGCTAGCTGTTCATTCTGTGTCTCTATCACTCCAG
Seq C2 exon
GTTACACACCTTACAAAGTAACATACGCTTCTGACTATTTTGACCAGTTGTATGCCTGGGCTGTGGAACTGATCCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(11.0=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(8.6=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAACGGTATTTGTTTTCTGC
R:
CTACGGATCAGTTCCACAGCC
Band lengths:
178-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]