GgaINT1023080 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11583663-11583957:+
Coord C1 exon
chr12:11583663-11583762
Coord A exon
chr12:11583763-11583878
Coord C2 exon
chr12:11583879-11583957
Length
116 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGG
5' ss Score
4.44
3' ss Seq
ACCTGTCTTGTCCCTCCCAGGCT
3' ss Score
10
Exon sequences
Seq C1 exon
GCCAACGGGGGCATCTGCTTCTTGCGCTATGACGACACCAACCCTGAGAAAGAGGAGGAGAAGTACTTCACGGCCATCCGGGAGATGGTGGAGTGGCTTG
Seq A exon
GTAGGGCTTGTACTGGGGAGAGCAGGATGGGGCTGGGATGCTGCTGGCAATATCCCTGCACGCAGCTCCTGCTGTCAGGCCCTAGTAATGGCTTCAACCTGTCTTGTCCCTCCCAG
Seq C2 exon
GCTACCAGCCCTACGCTGTGACTCATGCCTCAGACTACTTTGACCAGCTCTACACCTGGGCTCTGGAGCTCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(11.0=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGGGGGCATCTGCTT
R:
CTGCGGATGAGCTCCAGAG
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]