BtaINT0121059 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103759320-103760849:-
Coord C1 exon
chr11:103760749-103760849
Coord A exon
chr11:103759369-103760748
Coord C2 exon
chr11:103759320-103759368
Length
1380 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TGTTGGTTTTCTCCCCTCAGTAT
3' ss Score
8.79
Exon sequences
Seq C1 exon
ACTGGGCGGCTGCCATCCGCGTCGCCGCCCTGGACTGTGCGGAGGAGAAGAACCAGGAGGTGTGCCGCGCCTACGACATCCACTTCTACCCCACCTTCCGG
Seq A exon
GTGAGCGCCGCGCCTCCACCAGCCGCTCGCACGGCCTGGGGGCTTGGGGAGGGCGTCTCCCAGCTCAGGGGCTTCTGTGTGCAGGGGTCACCTCTCATTGCACCCCGTTGGATTGCAGGGTCACACTGGGACTGTGCACTTGCCTGCTCACACCCAGCGAGGCCTGCAGGCACGGGAGTGGCCGGCGCTGCCCTGAGAGCGCGTGCCCAAGTGAGGCGGGGCCCGCAGGTGCCTTGCCCAGGGGTGGGGGTCTGGTGCCTGCCAGCTGTGCCAGTAGCCGTGGCCGCCCTGCAGACCAGCCTGTCCCCATCTCTCCCGCTAGGGGGCGACTGGAACCTGAGCAGTGCACCCAGCTCTGTGTGTGTGTGTGTGTGTGCGCCTGTGTGTGCGTGCACACGTGTGCCTGTGTGTGTGGCCCCTCGCCTCACTGGAGCGCATCTGAGGAGGGAGGCCGTGCCTTTGGAGGTGGCCTCTGGGAAGCTTGGGGGCCCCCTTCCTCTCAGCCCTGAACCCGCGCCCTGTGTGCACAGCGCCAGCTGCTTCTCCCCGTCATGCTGACCTGGTGACCTCGTGTGTCCGTCTCTGGCTGGGCCCTGCCCACCAAGGCGCCCTCCCCTGGAGCGCAGTTCCAGGCTTGGGTCCGCTCAGCGCCTTCCTATTGGGTTTGCCTGTTGTGTCTCGGCTTTCCCCACAGGGTGCTGTGCTGCGTGTTCGGGGGCCCCCCCTCAGCTAACAGGATGCTGCTGGGACCCCCACACGCTGGGTGTGGCTGGGGCCCAGCCCTGGCGTGCAGTGCTGATGGGGGCCAGGGCGTGGCCTCTGTTCGGTCCTGGCCCATCTACCGCTGTCCCACCTGTGTTCTCCGGGCTGGTGTACAAGCCCCGTGTGTCTTCATCACGCCCCTTCGTCCAGCTGTGAGAGGGGGGTGTCGTCACCCCAGCCGTCACTTTCTCCATTGTCTTCACTGAGTCTTTCAGTGAAGAAGGTTTTTAATGTTCACGTACAATGCTTGTCCTCTGCCGGAAGACCCCTGTCGCAGAGCCTGTCTTCCTCCCGGGAGTCTGTGCACTGGCGCACCATGAGCCTGTGGGGGCAGTGCCAGCCGCGGGGGTCCTGTCGGGGTCCCAGCCCTGTCGGGGCAGAACCCCTGTGTGCCCGGGTCTGGTTGGTACTGAGCAGCCCTCGTGAGTCTGGAAGAAACACTGCCTTGCACAGAGGCCCGTAGAAGCGTGGTTTCATCATCAGTCAGCGTGAAGTTCCTGGCGCAGTGAGAGTGAAGCTCTCAGCCGTGACGGCCGTCTTGTTGCTTGAAGATGAGACGTTGCACAGGCGCCGGGCAGGGCCGCTCCTTACTTGTGTCTGTTGGTTTTCTCCCCTCAG
Seq C2 exon
TATTTTAAAGCGTTTACAAAGGACTTCACAACTGGAGAAAACTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.7=100)
A:
NA
C2:
PF0008515=Thioredoxin=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development